Browse Element(s) Details


OsAffx.2535.1.S1_at

Description tigr:9630.m00678
TID=OsAffx.2535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0732011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2535.1.S1_at--230--2871Chr02:3761419..3761440 (22 bp)
AAGGGACGTACTATGGACACGAATC
LOC_Os02g07320
OsAffx.2535.1.S1_at--578--5251Chr02:3761431..3761455 (25 bp)
GACACGAATCGAGCTCCGGGACCGG
LOC_Os02g07320
OsAffx.2535.1.S1_at--88--3751Chr02:3761495..3761519 (25 bp)
CTCAATCTCACAGCTCGGGAGGAGG
LOC_Os02g07320
OsAffx.2535.1.S1_at--1131--3211Chr02:3761557..3761581 (25 bp)
CAAGGGCACATCTTCTCGGGAGGAG
LOC_Os02g07320
OsAffx.2535.1.S1_at--847--2211Chr02:3761700..3761724 (25 bp)
ACAACCAGAACCAGGATTGCATCCA
LOC_Os02g07320
OsAffx.2535.1.S1_at--1142--3471Chr02:3761711..3761735 (25 bp)
CAGGATTGCATCCACCGGAAAGAGG
LOC_Os02g07320
OsAffx.2535.1.S1_at--236--7651Chr02:3761737..3761761 (25 bp)
GGGAGCACCTACTTCCGAAGGCCAG
LOC_Os02g07320
OsAffx.2535.1.S1_at--97--2051Chr02:3761747..3761771 (25 bp)
ACTTCCGAAGGCCAGGAGTATCAGG
LOC_Os02g07320
OsAffx.2535.1.S1_at--209--2611Chr02:3761792..3761816 (25 bp)
AACCGGAAGGACAGACAACAACAAG
LOC_Os02g07320
OsAffx.2535.1.S1_at--1049--11Chr02:3761995..3762019 (25 bp)
ATTGGCGGCACAGTCACAGAGGAGA
LOC_Os02g07320
OsAffx.2535.1.S1_at--726--7671Chr02:3762021..3762045 (25 bp)
GGGATTGCCAATCCTACTGAATCTC
LOC_Os02g07320
Target Sequence 
AAGGGACGTACTATGGACACGAATCGAGCTCCGGGACCGGGAGGAGGAGAAAAATACCGGCCGCCAGGAGCACGCGCCGC
TCAATCTCACAGCTCGGGAGGAGGAGAAGAGAAATACCGGCCGCCAGGAGCGCGCGCCGCCCAAGGGCACATCTTCTCGG
GAGGAGGAAGAGGTGAACGCCGGCCGCCAGGAGCACTCGGCGGCGACTGGCACTCATCGGGAGGAGGAGGAGGCAAATAC
CGGCCGCCAGGAGCACGCGGCGGCGGCGACTACGGGCACCAACCACAACCAGAACCAGGATTGCATCCACCGGAAAGAGG
GGGGAGCACCTACTTCCGAAGGCCAGGAGTATCAGGAGGAGGAGATTGGAGAAGCAAACCGGAAGGACAGACAACAACAA
GGACATGGGATGGGTTCTCGCGGCGACGGGACGAGGAAATGGATTGGCGGCACAGTCACAGAGGAGAAGGGATTGCCAAT
CCTACTGAATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis