Browse Element(s) Details


OsAffx.25377.3.S1_x_at

Description tigr:9631.m02955
TID=OsAffx.25377.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3021011/11hypothetical protein
LOC_Os10g092601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30160NANA3+17171270..17172471Kelch motif family protein
LOC_Os03g30170NANA3+17174322..17176996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30180OsAffx.22722.1.S1_x_at1/113+17177489..17179797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30190OsAffx.10496.1.S1_at1/113+17180303..17183412retrotransposon protein, putative, unclassified
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25377.3.S1_x_at--572--4511Chr03:17197510..17197534 (25 bp)
GCCGCTTAGACATCGTTGTCGTCCG
LOC_Os03g30210
OsAffx.25377.3.S1_x_at--130--4012Chr03:17197692..17197769 (25 bp)
CGTCGATTACCACTGCCTCGCTCGT
LOC_Os03g30210
OsAffx.25377.3.S1_x_at--1018--8095Chr08:14902697..14902721 (25 bp)
GGACCTCTTAGGAAACACATGCATG
NONE
OsAffx.25377.3.S1_x_at--1114--3497Chr08:14902718..14902742 (25 bp)
CATGGATGCATCTAGCAAAATCAAA
NONE
OsAffx.25377.3.S1_x_at--213--7997Chr08:14902721..14902745 (25 bp)
GGATGCATCTAGCAAAATCAAAGCC
NONE
OsAffx.25377.3.S1_x_at--913--2254Chr08:14902735..14902759 (25 bp)
AAATCAAAGCCCCTAGGCAACATGC
NONE
OsAffx.25377.3.S1_x_at--1076--9694Chr08:14902738..14902762 (25 bp)
TCAAAGCCCCTAGGCAACATGCAGT
NONE
OsAffx.25377.3.S1_x_at--316--2675Chr08:14902741..14902765 (25 bp)
AAGCCCCTAGGCAACATGCAGTAAC
NONE
OsAffx.25377.3.S1_x_at--1093--4515Chr08:14902743..14902766 (24 bp)
GCCCCTAGGCAACATGCAGTAACAG
NONE
OsAffx.25377.3.S1_x_at--905--10095Chr06:14715526..14715550 (25 bp)
TAGGCAACATGCAGTAACAGCTCAT
NONE
OsAffx.25377.3.S1_x_at--608--5155Chr06:14715529..14715553 (25 bp)
GCAACATGCAGTAACAGCTCATGTA
NONE
Target Sequence 
GCCGCTTAGACATCGTTGTCGTCCGGCCATTCTCGTCCATCCCGAAGCAAGCCGCTGTGCCAAGAATCTCGCCTCGACCA
CCTCTTCAAGACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCCTCGACGCCGAT
CCGAACTCGCCTCCACCGTCATCGTCGATTACCACTGCCTCGCTCGTCGTCCCGTTTGAGCCGTCGCCGTTCACCCGAGG
AGGAGCGTCGCCGTCGAACCGTTCCAACTGAAGCCGCTGCTATCCAAGCTTCGGAGATTTCTTCCTACAGCTTGGTGAGC
CTCCTGGACCTCTTAGGAAACACATGCATGGATGCATCTAGCAAAATCAAAGCCCCTAGGCAACATGCAGTAACAGCTCA
TGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25377.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis