Browse Element(s) Details


OsAffx.25428.1.S1_at

Description tigr:9631.m03754
TID=OsAffx.25428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3909010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25428.1.S1_at--176--3191Chr03:21680116..21680140 (25 bp)
CAATAACTCCACCTTTTGCTGATTT
LOC_Os03g39090
OsAffx.25428.1.S1_at--725--3411Chr03:21680083..21680107 (25 bp)
CAGAATCTGTTCACTCACTGAAGTT
LOC_Os03g39090
OsAffx.25428.1.S1_at--566--3731Chr03:21680070..21680094 (25 bp)
CTCACTGAAGTTTTGCAAGGCTGCT
LOC_Os03g39090
OsAffx.25428.1.S1_at--1134--5171Chr03:21680056..21680080 (25 bp)
GCAAGGCTGCTAGTAACTTTGTCAA
LOC_Os03g39090
OsAffx.25428.1.S1_at--1025--8731Chr03:21680029..21680053 (25 bp)
TGTCAAGGCTGACTGCAGCATGCCT
LOC_Os03g39090
OsAffx.25428.1.S1_at--688--1531NONE
AGCATGCCTTGAGGTGATGCGGCAC
NONE
OsAffx.25428.1.S1_at--50--8871Chr03:21679336..21679360 (25 bp)
TGATGCGGCACGGTTCCTGCGCTGC
LOC_Os03g39090
OsAffx.25428.1.S1_at--1097--9151Chr03:21679319..21679343 (25 bp)
TGCGCTGCCGTATGTGCTCCTGGTG
LOC_Os03g39090
OsAffx.25428.1.S1_at--923--7451Chr03:21679241..21679265 (25 bp)
GTGGAGGGACGGTCATCTACCGTTC
LOC_Os03g39090
OsAffx.25428.1.S1_at--327--7111Chr03:21679230..21679254 (25 bp)
GTCATCTACCGTTCGCAAGGGCGCG
LOC_Os03g39090
OsAffx.25428.1.S1_at--493--4711Chr03:21679110..21679134 (25 bp)
GCTGGCCGGGTTGGCTCATCTCGCA
LOC_Os03g39090
Target Sequence 
CAATAACTCCACCTTTTGCTGATTTTTTTTTTTCAGAATCTGTTCACTCACTGAAGTTTTGCAAGGCTGCTAGTAACTTT
GTCAAGATGTCAAGGCTGACTGCAGCATGCCTTGAGGTGATGCGGCACGGTTCCTGCGCTGCCGTATGTGCTCCTGGTGC
AGCAAGATGGACGCCGTCGAGACGCGGCATGGCGAGTCGGCCAGGGGAAAAGGTGGAGGGACGGTCATCTACCGTTCGCA
AGGGCGCGTGGCGGCGGTGGCGAGGTACAACGGGTTGGGTAGATTCCGTCGGCAGCGGCACCCCGGACTCCGGCAGCGCG
ACAGCGGCGGAAGGACGACGGTGGCTGGCCGGGTTGGCTCATCTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis