Browse Element(s) Details


OsAffx.25508.1.S1_at

Description tigr:9631.m04151
TID=OsAffx.25508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g183001/11expressed protein
LOC_Os03g431141/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18280Os.47114.1.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18280Os.46314.2.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18290OsAffx.28505.1.S1_at11/117+10835974..10837754transposon protein, putative, unclassified, expressed
LOC_Os07g18300OsAffx.28506.1.S1_at6/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.25508.1.S1_at1/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.3516.1.S1_x_at1/117+10840254..10845791expressed protein
LOC_Os07g18310NANA7+10849577..10850663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18320OsAffx.22759.1.S1_at3/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18320Os.36476.1.S1_at1/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18320OsAffx.22759.2.S1_at1/117+10851713..10855144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18330NANA7+10857312..10858304hypothetical protein
LOC_Os07g18340NANA7+10864746..10868199retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18350NANA7+10870294..10873223retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25508.1.S1_at--601--10812Chr07:10845051..10845122 (25 bp)
TTGTCAGCCGTTGGATTACATCTAA
LOC_Os07g18300
OsAffx.25508.1.S1_at--625--7092Chr12:9162873..9162893 (21 bp)
GTCAGCCGTTGGATTACATCTAAGT
NONE
OsAffx.25508.1.S1_at--392--4411Chr03:24008146..24008170 (25 bp)
GCCGTTGGATTACATCTAAGTGGTC
NONE
OsAffx.25508.1.S1_at--1052--6531Chr03:24008139..24008163 (25 bp)
GATTACATCTAAGTGGTCCTCGTTG
NONE
OsAffx.25508.1.S1_at--750--9871Chr03:24008136..24008160 (25 bp)
TACATCTAAGTGGTCCTCGTTGCAT
NONE
OsAffx.25508.1.S1_at--810--451Chr03:24008133..24008157 (25 bp)
ATCTAAGTGGTCCTCGTTGCATCCC
NONE
OsAffx.25508.1.S1_at--1135--9771Chr03:24008130..24008154 (25 bp)
TAAGTGGTCCTCGTTGCATCCCTTC
NONE
OsAffx.25508.1.S1_at--718--8591Chr03:24008126..24008150 (25 bp)
TGGTCCTCGTTGCATCCCTTCGCTG
NONE
OsAffx.25508.1.S1_at--404--3911Chr03:24008070..24008094 (25 bp)
CTGGCCTCATCGACTATTTGCCTCC
NONE
OsAffx.25508.1.S1_at--352--51NONE
ATTGAAGAAGCAGTGTTACTTACAG
NONE
OsAffx.25508.1.S1_at--82--3671Chr03:24007236..24007415 (25 bp)
CTTTATCCCACTAAGATGCCATGCC
LOC_Os03g43114
Target Sequence 
TTGTCAGCCGTTGGATTACATCTAAGTGGTCCTCGTTGCATCCCTTCGCTGCCTCCGGCCTTCCGCACCATATCGCCTCC
CCCTGGCCTCATCGACTATTTGCCTCCCGCTGCCTCACCGCATATTCGCCTCCCCCGACAGCAACAGCGACTACGGTGGC
GACGGACTCTATCGATGGCGACAACGACGCGGCGGCGGTCGCGGACGAGCGCGGCGTCGGCGGCGGTCGCGGACGAGCGT
GGCGTCAGCGGCGACGGTCGCGGACGAGCGCGGCGGCGACGGCGGCGGATGCGGACGAGCGCGGCGACGGCGGCGGCGGC
GGCAGCGGACGCGGATGAGGGCGGCGGTGGCGGAGGTCGCGGTCGAGGGCGGCGGCGGACCACGCACGCGGAAGGTTCCC
CTTCAGATTCCATCATTGAAGAAGCAGTGTTACTTACAGATCTATCAGGCTTTCAGGAAACATATATGCTCTTTATCCCA
CTAAGATGCCATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis