Browse Element(s) Details


OsAffx.25537.1.S1_x_at

Description tigr:9631.m04295
TID=OsAffx.25537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA-directed RNA polymerase, beta subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4448411/11DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0030422biological_processRNA interference, production of siRNA
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25537.1.S1_x_at--875--7831Chr03:24994825..24994849 (25 bp)
GGTAAAGTTGCTGCTCACATGGGAA
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--273--6331Chr03:24994858..24994882 (25 bp)
GATGCAACTCCTTTCACTGATGTTA
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--763--3511Chr03:24995163..24995187 (25 bp)
CATGATTTTCCTTGGTCCTACTTAT
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--930--1251Chr03:24995219..24995243 (25 bp)
AGATTCACTCTAGAGGCCGTGGTCC
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--729--4491Chr03:24995234..24995258 (25 bp)
GCCGTGGTCCTGTGCAGATACTTAC
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--996--6471Chr03:24995250..24995274 (25 bp)
GATACTTACCAGACAACCTGCAGAG
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--238--8771Chr03:24995323..24995347 (25 bp)
TGTATGATTGCTCATGGCGCTGCAT
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--641--8471Chr03:24995337..24995361 (25 bp)
TGGCGCTGCATTTTTCCTTAAGGAA
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--291--1111Chr03:24995408..24995432 (25 bp)
AGTGTGGGCTTATTGCTATTGCTAA
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--1105--1111Chr03:24995604..24995627 (24 bp)
AGTGCATATACCCTACGCGTGTAAG
LOC_Os03g44484
OsAffx.25537.1.S1_x_at--795--1831Chr03:24995617..24995641 (25 bp)
ACGCGTGTAAGCTTCTGTTCCAGGA
LOC_Os03g44484
Target Sequence 
GGTAAAGTTGCTGCTCACATGGGAAAAGAAGGAGATGCAACTCCTTTCACTGATGTTACTGTGGATAACATCAGCAAAGC
ACTTCATAAATGTGGTTATCAGATGCGTGGATTCGAGACCATGTACAACGGTCACACTGGAAGAAAATTAACTGCCATGA
TTTTCCTTGGTCCTACTTATTACCAGAGACTTAAGCACATGGTGGATGACAAGATTCACTCTAGAGGCCGTGGTCCTGTG
CAGATACTTACCAGACAACCTGCAGAGGGGCGCTCACGCGATGGTGGTCTCCGGTTTGGAGAGATGGAGAGGGACTGTAT
GATTGCTCATGGCGCTGCATTTTTCCTTAAGGAAAGGTTATTTGACCAGAGTGATGCGTACAGAGTCCATGTATGCGAGA
AGTGTGGGCTTATTGCTATTGCTAATCTCAAGAAGAATTCCTTTGAGTGCAGAGGGTGCAAGAACAAAACCGACATTGTC
CAAGTGCATATACCCTACGCGTGTAAGCTTCTGTTCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25537.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis