Browse Element(s) Details


OsAffx.25574.2.S1_x_at

Description tigr:9631.m04482
TID=OsAffx.25574.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative acetyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4620011/11acetyltransferase, GNAT family protein, expressed
LOC_Os06g212601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25574.2.S1_x_at--750--8391Chr03:26074179..26074203 (25 bp)
GGCGCTCTTCGCATGGGCGTCCGAC
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--664--4651Chr03:26074208..26074232 (25 bp)
GCGTCGTCCGGTTCCAGCGCCGCGA
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--529--5811Chr03:26074231..26074255 (25 bp)
GACGCCTACTCGCACGTCGACGAGG
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--905--6191Chr03:26074252..26074276 (25 bp)
GAGGCACGCCGCTACATCGTTGACA
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--957--2091Chr03:26074265..26074289 (25 bp)
ACATCGTTGACAAGGTCCTGCCGCA
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--1116--7472Chr03:26074333..26074357 (25 bp)
GTGGGATCCATCTCCGTCAAGCCGG
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--292--6371Chr03:26074337..26074361 (25 bp)
GATCCATCTCCGTCAAGCCGGCGGA
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--438--9312Chr07:7618712..7618731 (20 bp)
TCCCGGAGCCTGAGTCCGAGACCGG
NONE
OsAffx.25574.2.S1_x_at--204--7311Chr03:26074609..26074633 (25 bp)
GTGCTGCGCCGGTACGTCGTGCTCA
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--948--2111Chr03:26074649..26074673 (25 bp)
ACATGGTCATGTTCAGCCGCGTCCG
LOC_Os03g46200
OsAffx.25574.2.S1_x_at--314--4151Chr03:26074674..26074698 (25 bp)
CGCCGACCTCGAGGAAAAGCCCGCT
LOC_Os03g46200
Target Sequence 
GGCGCTCTTCGCATGGGCGTCCGACCCGCGCGTCGTCCGGTTCCAGCGCCGCGACGCCTACTCGCACGTCGACGAGGCAC
GCCGCTACATCGTTGACAAGGTCCTGCCGCACCCGTGGTACCGCGCCATCTGCGTCGCCGGCGCCGACCGCCCCGTGGGA
TCCATCTCCGTCAAGCCGGCGGACGACCTCCCGCTCCCGGAGCCTGAGTCCGAGACCGGCCGCCTCCGCTCCGGCTGCTG
CAGGGCCTCCGTCGGGTACCGGGTGGCGCACGCGCACTGGGGCCGCGGCGTGGCAACGCGGGCGGTGAGGGCGGTGGCGG
AGGCGGTGCTCGCGGAGTGGCCGTGGCTGGAGCGGCTGGAGGCCGTCGCCGACGTGGAGAACCCGGCGTCGCAGCGCGTG
CTGGAGAAGGCCGGGTTCGCCCGGGAGGGCGTGCTGCGCCGGTACGTCGTGCTCAAGGGGAGGCCCAGGGACATGGTCAT
GTTCAGCCGCGTCCGCGCCGACCTCGAGGAAAAGCCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25574.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis