Browse Element(s) Details


OsAffx.25632.1.S1_at

Description tigr:9631.m04777
TID=OsAffx.25632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4902010/11hypothetical protein
LOC_Os01g118504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48990Os.45173.1.S1_x_at2/113+27848372..27856619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49000OsAffx.9609.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49000OsAffx.12972.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49010OsAffx.13419.1.S1_at10/113+27867861..27868892hypothetical protein
LOC_Os03g49020OsAffx.25632.1.S1_at10/113+27872907..27875814hypothetical protein
LOC_Os03g49020Os.23133.1.S1_at1/113+27872907..27875814hypothetical protein
LOC_Os03g49030Os.46314.3.S1_at4/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.7362.1.S1_x_at2/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.265.1.S1_at1/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.1.S1_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.2.S1_s_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49050OsAffx.25633.1.S1_at10/113+27892585..27898122Lysine Decarboxylase, putative
LOC_Os03g49060NANA3+27900294..27901151retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25632.1.S1_at--177--4471NONE
GCCTCCCTGTGTAAAGACAAGCAGT
NONE
OsAffx.25632.1.S1_at--401--7031Chr03:27874563..27874587 (25 bp)
GTAAAGACAAGCAGTGGAAACCACT
LOC_Os03g49020
OsAffx.25632.1.S1_at--987--7513Chr06:7114735..7114759 (25 bp)
GTGGAAACCACTTTTCAAAGGTGTG
NONE
OsAffx.25632.1.S1_at--192--3295Chr06:7114750..7114774 (25 bp)
CAAAGGTGTGGAGACTGATGAACTG
NONE
OsAffx.25632.1.S1_at--647--5735Chr06:7114762..7114786 (25 bp)
GACTGATGAACTGGAGTTGCTGACA
NONE
OsAffx.25632.1.S1_at--39--1231Chr03:27874509..27874533 (25 bp)
AGTTGCTGACAACAAGACTGAAGGA
LOC_Os03g49020
OsAffx.25632.1.S1_at--320--5731Chr03:27874494..27874518 (25 bp)
GACTGAAGGAATGCTATGCTGGACT
LOC_Os03g49020
OsAffx.25632.1.S1_at--327--5271Chr03:27874486..27874510 (25 bp)
GAATGCTATGCTGGACTGCGAAATA
LOC_Os03g49020
OsAffx.25632.1.S1_at--878--4713Chr03:27874477..27874501 (25 bp)
GCTGGACTGCGAAATATCAGAACTG
LOC_Os03g49020
OsAffx.25632.1.S1_at--847--7511Chr03:27873649..27873670 (22 bp)
GTGGATGATCAGTTCCATTGCCAAA
LOC_Os03g49020
OsAffx.25632.1.S1_at--309--1311Chr03:27873487..27873626 (25 bp)
AGAGTTGAGGACTTTGTTTTTGGAT
LOC_Os03g49020
Target Sequence 
GCCTCCCTGTGTAAAGACAAGCAGTGGAAACCACTTTTCAAAGGTGTGGAGACTGATGAACTGGAGTTGCTGACAACAAG
ACTGAAGGAATGCTATGCTGGACTGCGAAATATCAGAACTGGGGTGGATGATCAGTTCCATTGCCAAATCGAAACAAATA
TGTTAGCATTAGAGTTGAGGACTTTGTTTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis