Browse Element(s) Details


OsAffx.25641.1.S1_at

Description tigr:9631.m04811
TID=OsAffx.25641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4936011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49330OsAffx.22947.1.S1_x_at11/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.2.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.3.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.5.S1_x_at3/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49340OsAffx.1319.1.S1_at1/113+28033052..28036135transposon protein, putative, Mariner sub-class
LOC_Os03g49350OsAffx.23548.1.S1_x_at1/113+28039240..28043641Lipoxygenase 3, putative, expressed
LOC_Os03g49360OsAffx.25641.1.S1_at11/113+28043803..28047310expressed protein
LOC_Os03g49380Os.14415.1.S1_a_at11/113+28056077..28062460Lipoxygenase 3, putative, expressed
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25641.1.S1_at--872--8891Chr03:28045564..28045588 (25 bp)
TGAGTGCGTATCTGGCCTGGAGTAC
LOC_Os03g49360
OsAffx.25641.1.S1_at--101--6091Chr03:28045545..28045569 (25 bp)
GAGTACGGCCCGGTCAGAAGCAATA
LOC_Os03g49360
OsAffx.25641.1.S1_at--1141--371Chr03:28045496..28045520 (25 bp)
ATCACTCTCATATCAACTTTCTGGC
LOC_Os03g49360
OsAffx.25641.1.S1_at--1152--2031Chr03:28045481..28045505 (25 bp)
ACTTTCTGGCGATTTGCGATGACCC
LOC_Os03g49360
OsAffx.25641.1.S1_at--199--711Chr03:28045397..28045421 (25 bp)
ATGAGGAGTCTTGGTGCATCCCTGT
LOC_Os03g49360
OsAffx.25641.1.S1_at--251--7871Chr03:28045374..28045396 (23 bp)
GGTTTCGCCGCATCGAGATACTGAA
LOC_Os03g49360
OsAffx.25641.1.S1_at--31--1371Chr03:28044041..28044065 (25 bp)
AGAGCTTCCATGGACGTGACACGGA
LOC_Os03g49360
OsAffx.25641.1.S1_at--638--5971Chr03:28043996..28044020 (25 bp)
GAGAACGACTCTTTCCTGGATTACA
LOC_Os03g49360
OsAffx.25641.1.S1_at--466--5151Chr03:28043957..28043981 (25 bp)
GCAACATTCGGCTCGCTGAAAGAAC
LOC_Os03g49360
OsAffx.25641.1.S1_at--412--2811Chr03:28043903..28043927 (25 bp)
AAGATTGCATCTACATCACTGCCTG
LOC_Os03g49360
OsAffx.25641.1.S1_at--760--3131Chr03:28043844..28043868 (25 bp)
AATTACCCGCCTATGTATCGAGAGC
LOC_Os03g49360
Target Sequence 
TGAGTGCGTATCTGGCCTGGAGTACGGCCCGGTCAGAAGCAATAGCCCATGGAGGATTTACAAATATAATCACTCTCATA
TCAACTTTCTGGCGATTTGCGATGACCCCCAATCTGCCAATGATCCTGCAACGCTCTTCTTTGCTGAATGTAGCAACTAT
AGCGTTCATGAGGAGTCTTGGTGCATCCCTGTGGTTTCGCCGCATCGAGATACTGAATTAGTCCGTTGCATTTACTGTGA
GAGCAAGGGGACTAGGATTGTGCATCCTGGTGAGAAGAGCTTCCATGGACGTGACACGGAATTTGAGAAGGTGATGCGTG
GAGAACGACTCTTTCCTGGATTACAGAGAGGATCCTACAGCAACATTCGGCTCGCTGAAAGAACCGATGCAGATTGGGTG
GATAATCTGGAGGAAGATTGCATCTACATCACTGCCTGCGCAGCGGATAATGATAGAAGAGTGAACCCGCTCAATTACCC
GCCTATGTATCGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis