Browse Element(s) Details


OsAffx.25692.1.S1_at

Description tigr:9631.m05180
TID=OsAffx.25692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25692.1.S1_at--599--7231Chr03:30282853..30282877 (25 bp)
GTCGCGCACCGATGAGGTCAGGCAC
LOC_Os03g52890
OsAffx.25692.1.S1_at--486--1031Chr03:30282867..30282891 (25 bp)
AGGTCAGGCACCTCATGGTGCACGA
LOC_Os03g52890
OsAffx.25692.1.S1_at--895--4291Chr03:30282877..30282901 (25 bp)
CCTCATGGTGCACGAGAGCATGCAT
LOC_Os03g52890
OsAffx.25692.1.S1_at--513--8611Chr03:30282882..30282906 (25 bp)
TGGTGCACGAGAGCATGCATGACGT
LOC_Os03g52890
OsAffx.25692.1.S1_at--976--1351Chr03:30282891..30282915 (25 bp)
AGAGCATGCATGACGTGGTCGGAAA
LOC_Os03g52890
OsAffx.25692.1.S1_at--656--8931Chr03:30282901..30282925 (25 bp)
TGACGTGGTCGGAAATCTCTCGGTT
LOC_Os03g52890
OsAffx.25692.1.S1_at--621--8551Chr03:30282906..30282930 (25 bp)
TGGTCGGAAATCTCTCGGTTTTTCT
LOC_Os03g52890
OsAffx.25692.1.S1_at--568--9571Chr03:30282931..30282955 (25 bp)
TCTTCTCTCCTCAGCAGACGGCTTG
LOC_Os03g52890
OsAffx.25692.1.S1_at--36--3571Chr03:30282980..30283004 (25 bp)
CATATGGCGGTGTCACTCCCCGTGG
LOC_Os03g52890
OsAffx.25692.1.S1_at--78--9891Chr03:30283083..30283107 (25 bp)
TACTTGCGACCCTGCGCCAAGGCTG
LOC_Os03g52890
OsAffx.25692.1.S1_at--189--4291Chr03:30283093..30283117 (25 bp)
CCTGCGCCAAGGCTGCCTAGTGAGC
LOC_Os03g52890
Target Sequence 
GTCGCGCACCGATGAGGTCAGGCACCTCATGGTGCACGAGAGCATGCATGACGTGGTCGGAAATCTCTCGGTTTTTCTTC
TTCTCTCCTCAGCAGACGGCTTGACGCCCTCCATCTCCATCCCTCCCCATATGGCGGTGTCACTCCCCGTGGCCCCCTTC
CCCCGAGCTGGCGACACCCTTTCCCCGAGCCGGCGGCTCAGCCGTGGTGCCTACACTCTCCCTCTCCCTCTACTTGCGAC
CCTGCGCCAAGGCTGCCTAGTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis