Browse Element(s) Details


OsAffx.25739.1.S1_at

Description tigr:9631.m05576
TID=OsAffx.25739.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5685011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25739.1.S1_at--784--1271Chr03:32329952..32329976 (25 bp)
AGATCATGTAACGTTCCTCGCTTTG
LOC_Os03g56850
OsAffx.25739.1.S1_at--68--9351Chr03:32329969..32329993 (25 bp)
TCGCTTTGGTTTCTGCTTGTGCTCA
LOC_Os03g56850
OsAffx.25739.1.S1_at--408--6591Chr03:32330014..32330038 (25 bp)
GATTGCGACTTTTCCGATGTATGAC
LOC_Os03g56850
OsAffx.25739.1.S1_at--810--8211Chr03:32330042..32330066 (25 bp)
GGAATATCAGATTGCACCTCGAATG
LOC_Os03g56850
OsAffx.25739.1.S1_at--418--5091Chr03:32330055..32330079 (25 bp)
GCACCTCGAATGGAGCATTTTGCTT
LOC_Os03g56850
OsAffx.25739.1.S1_at--800--8831Chr03:32330138..32330162 (25 bp)
TGATATGCCTTTCAAGCCAGATGCT
LOC_Os03g56850
OsAffx.25739.1.S1_at--82--9191Chr03:32330190..32330214 (25 bp)
TGCCGTGTGCATCGCAATGTCGAAC
LOC_Os03g56850
OsAffx.25739.1.S1_at--5--6631Chr03:32330246..32330270 (25 bp)
GTTGGATCCTCATAATTCTGGTTAT
LOC_Os03g56850
OsAffx.25739.1.S1_at--417--7871Chr03:32330265..32330289 (25 bp)
GGTTATTATGTGCTCATGTCCAATA
LOC_Os03g56850
OsAffx.25739.1.S1_at--1023--1711Chr03:32330397..32330421 (25 bp)
ACCAGCCATTTATTTGTTGCAGCAG
LOC_Os03g56850
OsAffx.25739.1.S1_at--927--9811Chr03:32330423..32330447 (25 bp)
TAAAAGCCACCCTGATTCTGAAGAT
LOC_Os03g56850
Target Sequence 
AGATCATGTAACGTTCCTCGCTTTGGTTTCTGCTTGTGCTCATGCTGGACAAGTTCAGGAAGGATTGCGACTTTTCCGAT
GTATGACCGAGGAATATCAGATTGCACCTCGAATGGAGCATTTTGCTTGCATGGTTGACCTATATAGTCGGGCAGGGAAG
TTGGATAAAGCTATGGAATTGATTGTTGATATGCCTTTCAAGCCAGATGCTGGTATTTGGGGTGCTCTTCTCCATGCTTG
CCGTGTGCATCGCAATGTCGAACTTGCAGAGATTGCTTCACAGGAATTATTTAAGTTGGATCCTCATAATTCTGGTTATT
ATGTGCTCATGTCCAATATCAATGCAGTTGCTGGACGATGGGATGGTGTATCAAAAGTGAGAAGGTTAATGAAGGATACG
AAAGTCCAAAAGATACCTGGTTACAGCTGGGTAGATGTAAATAACACCAGCCATTTATTTGTTGCAGCAGATAAAAGCCA
CCCTGATTCTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis