Browse Element(s) Details


OsAffx.25760.1.S1_at

Description tigr:9631.m05785
TID=OsAffx.25760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative AAA-type ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5880011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25760.1.S1_at--926--5751Chr03:33427921..33427945 (25 bp)
GACGTCGACTGCTCCAGCAACCTCA
LOC_Os03g58800
OsAffx.25760.1.S1_at--1098--1411Chr03:33428009..33428033 (25 bp)
AGAAAGTGATCGATCGCGGCGGCGG
LOC_Os03g58800
OsAffx.25760.1.S1_at--305--1631Chr03:33428120..33428144 (25 bp)
AGCGGCTGATCGTGCTGACGACGAA
LOC_Os03g58800
OsAffx.25760.1.S1_at--612--8311Chr03:33428123..33428147 (25 bp)
GGCTGATCGTGCTGACGACGAACCA
LOC_Os03g58800
OsAffx.25760.1.S1_at--1121--6391Chr03:33428127..33428151 (25 bp)
GATCGTGCTGACGACGAACCACGTC
LOC_Os03g58800
OsAffx.25760.1.S1_at--633--10591Chr03:33428221..33428245 (25 bp)
TTCGAGACGTTCAAGTCCATGGCCA
LOC_Os03g58800
OsAffx.25760.1.S1_at--602--5751Chr03:33428226..33428250 (25 bp)
GACGTTCAAGTCCATGGCCAAGATC
LOC_Os03g58800
OsAffx.25760.1.S1_at--1115--6751Chr03:33428229..33428253 (25 bp)
GTTCAAGTCCATGGCCAAGATCCAC
LOC_Os03g58800
OsAffx.25760.1.S1_at--82--1151Chr03:33428234..33428258 (25 bp)
AGTCCATGGCCAAGATCCACCTCGA
LOC_Os03g58800
OsAffx.25760.1.S1_at--130--7231Chr03:33428260..33428284 (25 bp)
GTCGACGACCACGAGATGTTCGCCG
LOC_Os03g58800
OsAffx.25760.1.S1_at--245--4071Chr03:33428384..33428408 (25 bp)
CGAGGCTGGTGAACGCGTTGCAGGA
LOC_Os03g58800
Target Sequence 
GACGTCGACTGCTCCAGCAACCTCACCGGCCGGCGCAAGGCCACCGGCGACGGGGAAGACGACGACGACGACGCCAAGAC
GACCACCAAGAAAGTGATCGATCGCGGCGGCGGCGGCGGCGGCGTCGGCGGCGACAGCAAGGTGACGCTGTCCGGGCTGC
TAAACTTCATCGACGGGCTGTGGTCGGCGTTCGGGGAGGAGCGGCTGATCGTGCTGACGACGAACCACGTCGAGGACCTG
GACCCGGCGCTGATCAGGACGGGGAGGATGGACAAGAAGATCGAGATGTCCTACTGCGACTTCGAGACGTTCAAGTCCAT
GGCCAAGATCCACCTCGACGTCGACGACCACGAGATGTTCGCCGCCGTCGAGAGGCTGCTGCCGGAGGTGGACCTGGTGC
CGGCCGACGTCGGCGAGCACCTCACGGCCAAGAACCCCCGGGACGACGCCGGCGCCTGCCTCGCGAGGCTGGTGAACGCG
TTGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis