Browse Element(s) Details


OsAffx.25760.1.S1_x_at

Description tigr:9631.m05785
TID=OsAffx.25760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative AAA-type ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5880011/11ATPase, AAA family protein, expressed
LOC_Os12g243201/11Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g094901/11Cell Division Protein AAA ATPase family, putative
LOC_Os06g482401/11ATPase, AAA family protein, expressed
LOC_Os03g587901/11ATPase 2, putative, expressed
LOC_Os12g441901/11ATPase 3, putative, expressed
LOC_Os12g442101/11Cell Division Protein AAA ATPase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25760.1.S1_x_at--182--9392Chr06:29180259..29180278 (20 bp)
TCGAGGACGTCGACTGCTCCAGCAA
LOC_Os06g48240
OsAffx.25760.1.S1_x_at--609--5811Chr03:33427990..33428014 (25 bp)
GACGCCAAGACGACCACCAAGAAAG
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--304--1631Chr03:33428120..33428144 (25 bp)
AGCGGCTGATCGTGCTGACGACGAA
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--678--8831Chr03:33428126..33428150 (25 bp)
TGATCGTGCTGACGACGAACCACGT
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--1061--9376Chr12:27389690..27389915 (25 bp)
TCGAGGACCTGGACCCGGCGCTGAT
LOC_Os12g44210
OsAffx.25760.1.S1_x_at--255--2811Chr03:33428197..33428221 (25 bp)
AAGATCGAGATGTCCTACTGCGACT
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--814--9911Chr03:33428212..33428236 (25 bp)
TACTGCGACTTCGAGACGTTCAAGT
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--603--5751Chr03:33428226..33428250 (25 bp)
GACGTTCAAGTCCATGGCCAAGATC
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--81--1151Chr03:33428234..33428258 (25 bp)
AGTCCATGGCCAAGATCCACCTCGA
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--131--7231Chr03:33428260..33428284 (25 bp)
GTCGACGACCACGAGATGTTCGCCG
LOC_Os03g58800
OsAffx.25760.1.S1_x_at--827--731Chr03:33428275..33428299 (25 bp)
ATGTTCGCCGCCGTCGAGAGGCTGC
LOC_Os03g58800
Target Sequence 
TCGAGGACGTCGACTGCTCCAGCAACCTCACCGGCCGGCGCAAGGCCACCGGCGACGGGGAAGACGACGACGACGACGCC
AAGACGACCACCAAGAAAGTGATCGATCGCGGCGGCGGCGGCGGCGGCGTCGGCGGCGACAGCAAGGTGACGCTGTCCGG
GCTGCTAAACTTCATCGACGGGCTGTGGTCGGCGTTCGGGGAGGAGCGGCTGATCGTGCTGACGACGAACCACGTCGAGG
ACCTGGACCCGGCGCTGATCAGGACGGGGAGGATGGACAAGAAGATCGAGATGTCCTACTGCGACTTCGAGACGTTCAAG
TCCATGGCCAAGATCCACCTCGACGTCGACGACCACGAGATGTTCGCCGCCGTCGAGAGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25760.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis