Browse Element(s) Details


OsAffx.25788.2.S1_at

Description tigr:9631.m06007
TID=OsAffx.25788.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6097611/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed
LOC_Os03g60950OsAffx.25785.1.S1_at11/113+34572844..34574104hypothetical protein
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004056molecular_functionargininosuccinate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25788.2.S1_at--662--10371Chr03:34578849..34578873 (25 bp)
TTTTGTCCCTGAGAAACGCTGAAAC
LOC_Os03g60976
OsAffx.25788.2.S1_at--543--6731Chr03:34578792..34578816 (25 bp)
GTTCTATCGAACAGATGAGGCGTCA
LOC_Os03g60976
OsAffx.25788.2.S1_at--1022--2331Chr03:34578724..34578748 (25 bp)
AAAGCATGCGGATCAGTGCAGACTT
LOC_Os03g60976
OsAffx.25788.2.S1_at--1002--1111Chr03:34578712..34578734 (23 bp)
AGTGCAGACTTGTGAAATCGAGGAT
LOC_Os03g60976
OsAffx.25788.2.S1_at--415--2271Chr03:34578578..34578602 (25 bp)
AAATCAGTGGTTGAAATTCTCGACC
LOC_Os03g60976
OsAffx.25788.2.S1_at--441--3771Chr03:34578560..34578584 (25 bp)
CTCGACCTATCTATACAACTTGTTA
LOC_Os03g60976
OsAffx.25788.2.S1_at--896--2031Chr03:34578543..34578567 (25 bp)
ACTTGTTAAAAGCATCTCGTTTGAT
LOC_Os03g60976
OsAffx.25788.2.S1_at--477--4291Chr03:34578498..34578522 (25 bp)
CCTCCCCAGAGGCTATGATGATATT
LOC_Os03g60976
OsAffx.25788.2.S1_at--969--1011Chr03:34578470..34578494 (25 bp)
AGGTTTGCGCATTTCCTGACAACAA
LOC_Os03g60976
OsAffx.25788.2.S1_at--46--9391Chr03:34578170..34578194 (25 bp)
TCGATTCGGTAACAGCTTATGCCTT
LOC_Os03g60976
OsAffx.25788.2.S1_at--1002--3951Chr03:34578110..34578134 (25 bp)
CGGAGCTCACTCTAGAAAAACGCGA
LOC_Os03g60976
Target Sequence 
TTTTGTCCCTGAGAAACGCTGAAACAGCCATATATGAGACAACCCTAGGAAAGTTGAGTTCTATCGAACAGATGAGGCGT
CATGGAGATGTTGCTATCTCAAAATGTCTAAATCTTAGATTTGGAAAAGCATGCGGATCAGTGCAGACTTGTGAAATCGA
GGATGCTAAGCACCATTTATTTTCTAGCACTAAATCAGTGGTTGAAATTCTCGACCTATCTATACAACTTGTTAAAAGCA
TCTCGTTTGATATGGAAAAGGCCCAAAATTGCCTCCCCAGAGGCTATGATGATATTATGAGGTTTGCGCATTTCCTGACA
ACAAAGGGAATCGATTCGGTAACAGCTTATGCCTTGGTCCATCTGTGCTTGGATAAACAGCTCCAACCTTCGGAGCTCAC
TCTAGAAAAACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25788.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis