Browse Element(s) Details


OsAffx.25792.1.S1_at

Description tigr:9631.m06116
TID=OsAffx.25792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative heat shock protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6194011/11Small heat shock protein, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25792.1.S1_at--1016--9731Chr03:35053177..35053201 (25 bp)
TCAATGCTTTTGATTTCCTCTCTAT
LOC_Os03g61940
OsAffx.25792.1.S1_at--935--9251Chr03:35053162..35053186 (25 bp)
TCCTCTCTATTTGGTAGTGCAACGG
LOC_Os03g61940
OsAffx.25792.1.S1_at--1033--1111Chr03:35053147..35053171 (25 bp)
AGTGCAACGGTTGGTCCATTTGCTC
LOC_Os03g61940
OsAffx.25792.1.S1_at--417--4571Chr03:35053018..35053042 (25 bp)
GCGCGCTCGGCATTGAACAACATAT
LOC_Os03g61940
OsAffx.25792.1.S1_at--731--3991Chr03:35052980..35053004 (25 bp)
CGTGGATCTGATCACCGATGCGGTT
LOC_Os03g61940
OsAffx.25792.1.S1_at--228--4691Chr03:35052961..35052985 (25 bp)
GCGGTTGATACGATAGATGCTGGAC
LOC_Os03g61940
OsAffx.25792.1.S1_at--70--5291Chr03:35052926..35052950 (25 bp)
GAATGTTCAACAATGTCACGCTGGG
LOC_Os03g61940
OsAffx.25792.1.S1_at--1082--7291Chr03:35052861..35052885 (25 bp)
GTGCGGATATGCTTCGGGACATCAT
LOC_Os03g61940
OsAffx.25792.1.S1_at--940--7351Chr03:35052819..35052843 (25 bp)
GTGAAATACGGTTCGACATGCTGGG
LOC_Os03g61940
OsAffx.25792.1.S1_at--206--2111Chr03:35052804..35052828 (25 bp)
ACATGCTGGGCCTGTCACGGGAAGA
LOC_Os03g61940
OsAffx.25792.1.S1_at--786--951Chr03:35052762..35052786 (25 bp)
AGGACAACATGCTTGTCATCCGCGG
LOC_Os03g61940
Target Sequence 
TCAATGCTTTTGATTTCCTCTCTATTTGGTAGTGCAACGGTTGGTCCATTTGCTCTCGTCACCCGGGTCTCACCTGTGGC
GTGCCTCCCCATCCGCGCCGCCTGGAGGAGCACGTCAGGTAATAGAACGGTGGGAACCAGCAGGGGAATGTCGTGCAGCG
CGCGCTCGGCATTGAACAACATATCCCCATTCGCCCTCGTGGATCTGATCACCGATGCGGTTGATACGATAGATGCTGGA
CATGATAGACTGAATGTTCAACAATGTCACGCTGGGGTTCCCCGTCGCGCTGTGGAGATCGCCGGCGACAGGGAAGGTGC
GGATATGCTTCGGGACATCATGGATGATGACAAACGAGGTGAAATACGGTTCGACATGCTGGGCCTGTCACGGGAAGATG
TGAAGGTGATGGTGGAGGACAACATGCTTGTCATCCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis