Browse Element(s) Details


OsAffx.25807.1.S1_at

Description tigr:9631.m06254
TID=OsAffx.25807.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6321011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25807.1.S1_at--501--9772Chr03:35657726..35657750 (25 bp)
TAGAGGCTGGACTGGACCGAACCTT
LOC_Os03g63210
OsAffx.25807.1.S1_at--602--4111Chr03:35657743..35657767 (25 bp)
CGAACCTTCGTTGGATTGGGCCAGA
LOC_Os03g63210
OsAffx.25807.1.S1_at--1161--6591Chr03:35657756..35658252 (25 bp)
GATTGGGCCAGAAATGGGTCTCAAT
LOC_Os03g63210
OsAffx.25807.1.S1_at--609--8631Chr03:35658247..35658266 (20 bp)
TGGGTCTCAATGAAGCGCTGCAGCT
LOC_Os03g63210
OsAffx.25807.1.S1_at--943--6111Chr03:35658277..35658301 (25 bp)
GAGTGGCGCACGACGGCTATCCTGC
LOC_Os03g63210
OsAffx.25807.1.S1_at--882--4471Chr03:35658374..35658398 (25 bp)
GCCGTCGGTTCGAGTCCATGGGACA
LOC_Os03g63210
OsAffx.25807.1.S1_at--1084--1131Chr03:35658386..35658410 (25 bp)
AGTCCATGGGACACTATCACACTAG
LOC_Os03g63210
OsAffx.25807.1.S1_at--1111--7511Chr03:35658505..35658529 (25 bp)
GTGGAGCTGGGACTGCTCTACTCCC
LOC_Os03g63210
OsAffx.25807.1.S1_at--33--3551Chr03:35658534..35658558 (25 bp)
CATCGCGCGCAGAGTGGAGTTCGAC
LOC_Os03g63210
OsAffx.25807.1.S1_at--497--431Chr03:35658589..35658613 (25 bp)
ATCTTCCTGGCCAGGGTCGACTGTA
LOC_Os03g63210
OsAffx.25807.1.S1_at--349--3471Chr03:35658600..35658624 (25 bp)
CAGGGTCGACTGTATGGCCGTCGCC
LOC_Os03g63210
Target Sequence 
TAGAGGCTGGACTGGACCGAACCTTCGTTGGATTGGGCCAGAAATGGGTCTCAATGAAGCGCTGCAGCTGCTGGCGGAGG
AGTGGCGCACGACGGCTATCCTGCCTCCTCCCTCATCGCGTGCGCTCGGTGGCGTCGCCGGAACTCCTCCCCCGCCTCGC
CTCCGGCTTCTCCTCCGCCGTCGGTTCGAGTCCATGGGACACTATCACACTAGAGAGAGGAGCACGAGCCCCATAGCCCC
GCCGTGGATGGTGCTCGCGGAGGCGGCGCTGCGGCTGTGGCTGGCGGCGGAACCACGGGAGCTAAGGGTGGAGCTGGGAC
TGCTCTACTCCCGCGCCATCGCGCGCAGAGTGGAGTTCGACGCCACGGTGCTCGATGATGCCGTGCCGGGGATCTTCCTG
GCCAGGGTCGACTGTATGGCCGTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis