Browse Element(s) Details


OsAffx.25900.1.S1_at

Description tigr:9632.m00604
TID=OsAffx.25900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0691011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein
LOC_Os04g06910OsAffx.25900.1.S1_at11/114+3635322..3637499hypothetical protein
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein
LOC_Os04g06930OsAffx.13700.1.S1_at11/114+3648821..3649744hypothetical protein
LOC_Os04g06940OsAffx.20369.1.S1_at5/114+3650044..3651084retrotransposon protein, putative, unclassified, expressed
LOC_Os04g06950NANA4+3653912..3654481transposon protein, putative, unclassified
LOC_Os04g06960NANA4+3655273..3657954retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g06970OsAffx.13701.1.S1_at11/114+3658788..3660363hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25900.1.S1_at--1086--5011Chr04:3636766..3636790 (25 bp)
GCACATTGCCACTGAACTTTTTCTC
LOC_Os04g06910
OsAffx.25900.1.S1_at--1150--5471Chr04:3636779..3636803 (25 bp)
GAACTTTTTCTCTCCAGATTCAATA
LOC_Os04g06910
OsAffx.25900.1.S1_at--94--4051Chr04:3636843..3636867 (25 bp)
CGATCAAGGCGCTGTCCAATTATAT
LOC_Os04g06910
OsAffx.25900.1.S1_at--380--10191Chr04:3636863..3636887 (25 bp)
TATATGATGTTTCTCCTAGTCGCCC
LOC_Os04g06910
OsAffx.25900.1.S1_at--1008--271Chr04:3636918..3636942 (25 bp)
ATAGGCTCTACCAACGAAGCTGGAA
LOC_Os04g06910
OsAffx.25900.1.S1_at--79--8451Chr04:3636962..3636986 (25 bp)
TGGCCTAAAGTTATTGACGACCCTA
LOC_Os04g06910
OsAffx.25900.1.S1_at--895--5811Chr04:3636980..3637004 (25 bp)
GACCCTACTTATGATCATCCTTGTT
LOC_Os04g06910
OsAffx.25900.1.S1_at--584--3211Chr04:3637024..3637048 (25 bp)
CAAGGAACTATTCAGCCTGCAGCGC
LOC_Os04g06910
OsAffx.25900.1.S1_at--432--6211Chr04:3637160..3637184 (25 bp)
GAGGCTTCTCGTGTCATATATGCTG
LOC_Os04g06910
OsAffx.25900.1.S1_at--712--1991Chr04:3637212..3637236 (25 bp)
ACTCCCAACTGCTCCTAGAAATGTG
LOC_Os04g06910
OsAffx.25900.1.S1_at--67--6551Chr04:3637241..3637265 (25 bp)
GATTTTCTAGTCTATGCGGCCAACC
LOC_Os04g06910
Target Sequence
GCACATTGCCACTGAACTTTTTCTCTCCAGATTCAATAGAGTTAACGACCAGAATGATGCAGAGCCCACAATGCAGGCGA
TCAAGGCGCTGTCCAATTATATGATGTTTCTCCTAGTCGCCCGCCCAGATATGCTTCCTGGCCTTGCTCAAAATAGGCTC
TACCAACGAAGCTGGAAATTTTTGTATGAGGAAATATGGCCTAAAGTTATTGACGACCCTACTTATGATCATCCTTGTTG
GATTATCCGAACTATGTTCAAGGAACTATTCAGCCTGCAGCGCGATGAACCCAACTCTGATTCTTGGCGCCCGCAAGGAG
AGAAGCTTGCTAGCAAACTACTGGAAGTGTGGAGAAATTATGTGAATGAAGAAGAGGGGGTAATCTTGAAACCTGAGGCT
TCTCGTGTCATATATGCTGTTTCTTTGGCCGACAAACTGAAGGAAGACTCCCAACTGCTCCTAGAAATGTGGATAGATTT
TCTAGTCTATGCGGCCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis