Browse Element(s) Details


OsAffx.25907.2.S1_x_at

Description tigr:9632.m00628
TID=OsAffx.25907.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myosin heavy chain catch (smooth) muscle specific isoform
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0715011/11hypothetical protein
LOC_Os04g072802/11expressed protein
LOC_Os04g078901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07110Os.15125.1.S1_x_at7/114+3753352..3755610expressed protein
LOC_Os04g07110Os.26930.1.S2_x_at1/114+3753352..3755610expressed protein
LOC_Os04g07120Os.39852.1.S1_at2/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07120OsAffx.18193.1.S1_at1/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07120OsAffx.13644.1.S1_at1/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07130OsAffx.13703.1.S1_x_at11/114+3770426..3771483hypothetical protein
LOC_Os04g07140OsAffx.3737.1.S1_at11/114+3774522..3775592hypothetical protein
LOC_Os04g07150OsAffx.25907.2.S1_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.2.S1_x_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.1.S1_x_at2/114+3779144..3781403hypothetical protein
LOC_Os04g07160NANA4+3786839..3790171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.47463.1.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.14491.2.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13703.1.S1_x_at3/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.25916.1.S1_at2/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13720.1.S1_at1/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07190OsAffx.13705.1.S1_at11/114+3805040..3806141hypothetical protein
LOC_Os04g07190OsAffx.25918.1.S1_at2/114+3805040..3806141hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25907.2.S1_x_at--799--9431Chr04:3780740..3780764 (25 bp)
TCGGTTGGATGTTTTGACTGCACAA
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--1001--2291Chr04:3780833..3780857 (25 bp)
AAAGGAGGCGACTACAAAGGCATTC
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--972--2292Chr04:3780848..3780872 (25 bp)
AAAGGCATTCGACGCTGAGAAAGCA
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--1033--6173Chr04:4205009..4205123 (25 bp)
GAGGAAATCCAGGTTAAAAGGCTCA
LOC_Os04g07890
OsAffx.25907.2.S1_x_at--474--4731Chr04:3781065..3781089 (25 bp)
GCTGTGAAGTCATTTGATGCCGAGA
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--966--3011Chr04:3781139..3781163 (25 bp)
AATCCAGGTCAGCAAGGAAGCTTCT
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--420--3651Chr04:3781159..3781183 (25 bp)
CTTCTGAGGAAGTAGGGCGCAACAA
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--757--6051Chr04:3781212..3781236 (25 bp)
GAGTTGGTGAAGATCCATGTTTCTT
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--1150--8851Chr04:3781268..3781292 (25 bp)
TGATGCTAAGCATTCGCTCCTGAGT
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--366--1551Chr04:3781276..3781300 (25 bp)
AGCATTCGCTCCTGAGTGACGAGAA
LOC_Os04g07150
OsAffx.25907.2.S1_x_at--604--7371Chr04:3781291..3781315 (25 bp)
GTGACGAGAAGAATTCAGTCCAGAA
LOC_Os04g07150
Target Sequence 
TCGGTTGGATGTTTTGACTGCACAACAGAAACAAAGCATATTAGAAGTAGAGGCTAACAATCTCAAGATGGAATTGGGTG
CATTGGTGGAGGCAAAGGAGGCGACTACAAAGGCATTCGACGCTGAGAAAGCAAAAATAATGAAGGAATTGGAGGATGTT
AAGAGGAAGATGGAGGAAATCCAGGTTAAAAGGCTCAAGATGGAACTTGGTGCATTGGTAGAGGCAAATGGGATAGCTGT
GAAGTCATTTGATGCCGAGAAGGCAAAATTCATCAGGGAAATGGGGGACCTCAAGAGGAAGATTGAGGAAATCCAGGTCA
GCAAGGAAGCTTCTGAGGAAGTAGGGCGCAACAAGAATGCAGAGGCTGATAGGCTGAGGGCTGAGTTGGTGAAGATCCAT
GTTTCTTTATCACAACTACAAGCATCCTATAATGAACTTGATGCTAAGCATTCGCTCCTGAGTGACGAGAAGAATTCAGT
CCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25907.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis