Browse Element(s) Details


OsAffx.25928.1.S1_at

Description tigr:9632.m00763
TID=OsAffx.25928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0847010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08450Os.8352.1.S1_at11/114+4530762..4534703expressed protein
LOC_Os04g08460OsAffx.25927.1.S1_at11/114+4544331..4545799F-box domain containing protein
LOC_Os04g08470OsAffx.25928.1.S1_at10/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_x_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08470Os.5139.2.S1_at1/114+4551546..4558566F-box domain containing protein
LOC_Os04g08480Os.26886.6.S1_s_at10/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480Os.26886.2.S1_s_at9/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.16467.1.S1_at3/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08480OsAffx.22240.1.S1_x_at1/114+4561625..4566710transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.1.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08490Os.26886.3.S1_x_at5/114+4570653..4574004transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08500OsAffx.3748.1.S1_at11/114+4578450..4579526hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25928.1.S1_at--521--5291Chr04:4554342..4554366 (25 bp)
GAATGGCTGTTCATTCAGCGGAGAA
LOC_Os04g08470
OsAffx.25928.1.S1_at--891--5951Chr04:4554216..4554307 (25 bp)
GAGCAATATGCTACTTTATCACCCA
LOC_Os04g08470
OsAffx.25928.1.S1_at--389--791Chr04:4554166..4554190 (25 bp)
ATGTGGATTTAACCCTATCTCCGGA
LOC_Os04g08470
OsAffx.25928.1.S1_at--25--6311Chr04:4553277..4553297 (21 bp)
GATGAGGCACGGATATTTGCATTGT
LOC_Os04g08470
OsAffx.25928.1.S1_at--901--7873Chr04:4555524..4555548 (25 bp)
GGTTTTGGTGTAGCAAGCACCTCCA
LOC_Os04g08470
OsAffx.25928.1.S1_at--782--8171Chr04:4552231..4552255 (25 bp)
GGAACTGCGTTTACTTATCTGAACC
LOC_Os04g08470
OsAffx.25928.1.S1_at--657--3851Chr04:4552213..4552237 (25 bp)
CTGAACCTAGGTCGTGTACTCATCA
LOC_Os04g08470
OsAffx.25928.1.S1_at--128--151Chr04:4552127..4552151 (25 bp)
ATTAGAATTGCAAGCTTTCCACCCC
LOC_Os04g08470
OsAffx.25928.1.S1_at--498--1551Chr04:4552115..4552139 (25 bp)
AGCTTTCCACCCCAGTATTTCAGGG
LOC_Os04g08470
OsAffx.25928.1.S1_at--750--9451NONE
TCTGGAGTTGAGTATCGCGGGCTTC
NONE
OsAffx.25928.1.S1_at--1021--1191Chr04:4551775..4551799 (25 bp)
AGTATCGCGGGCTTCTCAGGTGGTA
LOC_Os04g08470
Target Sequence 
GAATGGCTGTTCATTCAGCGGAGAAAGAGTCTCAAAGATCAAGTGGAATTTTGTATGGTGAGCAATATGCTACTTTATCA
CCCAATGTAAAACATGCAGGGGAGATTCTATGTGGATTTAACCCTATCTCCGGAGATGAGGCACGGATATTTGCATTGTA
TTATTCAAGAGTATATGTGTCTAAGAATTCCGAGGACATTGCATTTTTCGTGTCAAAGAATTTCAATACAGGTTTTGGTG
TAGCAAGCACCTCCAACAATGGAACTGCGTTTACTTATCTGAACCTAGGTCGTGTACTCATCAAGATCAAAAAGGCACAG
TCAACTATTTATTATCTGGAAATGGTTGATATTAACACTAACGAATTAGAATTGCAAGCTTTCCACCCCAGTATTTCAGG
GTTTAGGGGCTCTATGCTGGATTCATCCGAATCTCTGGAGTTGAGTATCGCGGGCTTCTCAGGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis