Browse Element(s) Details


OsAffx.25982.2.S1_at

Description tigr:9632.m01028
TID=OsAffx.25982.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1153010/11Methyl-CpG binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11510OsAffx.25982.1.S1_at11/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_x_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510OsAffx.25982.4.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11520NANA4+6282001..6283816hypothetical protein
LOC_Os04g11530OsAffx.25982.2.S1_at10/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11530OsAffx.25982.3.S1_at1/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11540NANA4+6302127..6304062retrotransposon protein, putative, unclassified
LOC_Os04g11550NANA4+6305862..6307419retrotransposon protein, putative, unclassified
LOC_Os04g11560OsAffx.14826.2.S1_at2/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11560OsAffx.25476.2.S1_at1/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11570OsAffx.25984.1.S1_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11570OsAffx.25984.1.S1_x_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11580Os.45976.1.S1_at5/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11580Os.45976.1.S1_x_at4/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25982.2.S1_at--1042--8131Chr04:6297055..6297079 (25 bp)
GGACAAACCAGCTGCGCACAAGATT
LOC_Os04g11530
OsAffx.25982.2.S1_at--735--2531NONE
AACTAGCGGCGTGGAACTGCTGCTG
NONE
OsAffx.25982.2.S1_at--974--6771Chr04:6298270..6298732 (25 bp)
GTTACTGGCTAGCAATCCATGTTGT
LOC_Os04g11530
OsAffx.25982.2.S1_at--935--4351Chr04:6298760..6298784 (25 bp)
CCACCATCCTAAGCTTTGTTCATTA
LOC_Os04g11530
OsAffx.25982.2.S1_at--137--9791Chr04:6298829..6298851 (23 bp)
TAAGCAGTATCTGTGTTCGGTCCTC
LOC_Os04g11530
OsAffx.25982.2.S1_at--1140--10531Chr04:6298854..6298878 (25 bp)
TTCAGGCTGAACGTAGTCTGCCCAT
LOC_Os04g11530
OsAffx.25982.2.S1_at--841--4951Chr04:6298882..6298906 (25 bp)
GCATTTGTCGTTAGCTTCGCAGTTA
LOC_Os04g11530
OsAffx.25982.2.S1_at--834--4911Chr04:6298895..6298919 (25 bp)
GCTTCGCAGTTAGTGCTGCTCAGAT
LOC_Os04g11530
OsAffx.25982.2.S1_at--1010--7611Chr04:6298926..6298950 (25 bp)
GGGAACTCCGCAGTAATCTGTTGTC
LOC_Os04g11530
OsAffx.25982.2.S1_at--1133--9751Chr04:6298939..6299299 (25 bp)
TAATCTGTTGTCGAGTCTGCCGAAG
LOC_Os04g11530
OsAffx.25982.2.S1_at--725--8951Chr04:6299310..6299334 (25 bp)
TGACAATTCAGACACAGCACATGGG
LOC_Os04g11530
Target Sequence 
GGACAAACCAGCTGCGCACAAGATTGTCGAAACTCCGAAAACTATCACTGAAAGAAGAGATACTTAGTGACGAGCAAGGT
TCAACTAGCGGCGTGGAACTGCTGCTGGTGGTGGTCTGGCAGCTGTGGCTTGGAGGGGGGGGGGGTCTCTTTGGTGGCAG
TGCTGGTGGTGGCGCGGACGGCAGCCGTTACTGGCTAGCAATCCATGTTGTCGGTGTAGTAAGGCAGACGTTTACTAACC
ACCATCCTAAGCTTTGTTCATTAAGCAGTATCTGTGTTCGGTCCTCCATTCAGGCTGAACGTAGTCTGCCCATGCGGCAT
TTGTCGTTAGCTTCGCAGTTAGTGCTGCTCAGATTTATCGGGGAACTCCGCAGTAATCTGTTGTCGAGTCTGCCGAAGAT
TGCAACTCTGACAATTCAGACACAGCACATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25982.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis