Browse Element(s) Details


OsAffx.26000.1.S1_at

Description tigr:9632.m01129
TID=OsAffx.26000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1254011/11D-mannose binding lectin family protein, expressed
LOC_Os08g344202/11retrotransposon protein, putative, unclassified
LOC_Os03g391901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12499Os.27591.1.A1_at11/114+6893080..6894617amino acid transporter family protein, putative, expressed
LOC_Os04g12508NANA4+6895066..6895785amino acid transporter family protein, putative
LOC_Os04g12520Os.41695.15.S1_s_at11/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.5.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.2.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.3.S1_x_at10/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12520Os.41695.4.S1_x_at1/114+6896746..6903530transposon protein, putative, Mutator sub-class
LOC_Os04g12530OsAffx.3777.1.S1_at10/114+6904831..6906793amino acid transporter family protein, putative
LOC_Os04g12540OsAffx.26000.1.S1_at11/114+6918914..6922552D-mannose binding lectin family protein, expressed
LOC_Os04g12550NANA4+6931177..6931713hypothetical protein
LOC_Os04g12560NANA4+6935325..6937760D-mannose binding lectin family protein, expressed
LOC_Os04g12570OsAffx.13789.1.S1_at11/114+6939063..6939455hypothetical protein
LOC_Os04g12580NANA4+6946439..6948875D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26000.1.S1_at--1016--311Chr04:6919497..6919518 (22 bp)
ATACGCTTCTAAATGTGGATACGAC
LOC_Os04g12540
OsAffx.26000.1.S1_at--711--5332Chr08:21476656..21476680 (25 bp)
GAAGATTGCACTCTAATGACTCGGC
LOC_Os08g34420
OsAffx.26000.1.S1_at--331--5991Chr04:6919391..6919415 (25 bp)
GAGACATACATACAACAACAGCTGA
LOC_Os04g12540
OsAffx.26000.1.S1_at--136--3071Chr04:6919269..6919293 (25 bp)
AATCAGGGATTGTCGAGGCCTCGTG
LOC_Os04g12540
OsAffx.26000.1.S1_at--773--3551Chr04:6919244..6919268 (25 bp)
CTACTGGCTTCCTGTAAGAAACTAC
LOC_Os04g12540
OsAffx.26000.1.S1_at--717--2751Chr04:6919229..6919253 (25 bp)
AAGAAACTACCACGGTGCAGCTCAG
LOC_Os04g12540
OsAffx.26000.1.S1_at--181--1611Chr04:6919197..6919221 (25 bp)
AGCTGAAGCCTTGGTGTGTCTGGAA
LOC_Os04g12540
OsAffx.26000.1.S1_at--730--7151Chr04:6919180..6919204 (25 bp)
GTCTGGAAGGTATCCGGCTTGCTAC
LOC_Os04g12540
OsAffx.26000.1.S1_at--6--811Chr04:6918953..6918977 (25 bp)
ATGGGATCAGGAACTAATACGGTCT
LOC_Os04g12540
OsAffx.26000.1.S1_at--574--8551Chr04:6918929..6918953 (25 bp)
TGGAGATTGTGTTCCCCTGCAGAAA
LOC_Os04g12540
OsAffx.26000.1.S1_at--970--7413Chr08:21477205..21477224 (20 bp)
GTGTTCCCCTGCAGAAATTCTTGAT
LOC_Os08g34420
Target Sequence 
ATACGCTTCTAAATGTGGATACGACTTTTTGAAGAACTACGAAGATTGCACTCTAATGACTCGGCAACAACCTGATGATG
TGAAAGGAAAAGGACCAATGTTTGTTGAGACATACATACAACAACAGCTGAACGAAAAGCAAGTGGCAAACTCCACCAAA
GGTGAAGCAGGCGCTGGGATAATAATCAGGGATTGTCGAGGCCTCGTGCTACTGGCTTCCTGTAAGAAACTACCACGGTG
CAGCTCAGCAATGCAAGCTGAAGCCTTGGTGTGTCTGGAAGGTATCCGGCTTGCTACTGAATGGGTGAATATGCCACTTA
TCTTAGAATCAGATAATACAAGTGTTGTCGCTGAGTTAAACGCGACCAATGTCTCAAGAGCAGATTGGAGTGGCATAATT
TCAGATGTTAAAGCGGCAATGTTATGTTTAGCTCAGGTGCAAGTGCACAGGATAAAGAGAGATTCTAATAAGATAGCTTA
TGCTTTAGCCCAACTGGTAATGGGATCAGGAACTAATACGGTCTGGAGATTGTGTTCCCCTGCAGAAATTCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis