Browse Element(s) Details


OsAffx.26001.4.S1_at

Description tigr:9633.m04080
TID=OsAffx.26001.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=82031-83904
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4381011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26001.4.S1_at--235--7911Chr05:25384485..25384509 (25 bp)
GGTTCCATAATCCAGTGTCGTTCCT
LOC_Os05g43810
OsAffx.26001.4.S1_at--342--591Chr05:25384281..25384305 (25 bp)
ATGCCACGCCGGCTGAATTCAGGTT
LOC_Os05g43810
OsAffx.26001.4.S1_at--334--3131Chr05:25384266..25384290 (25 bp)
AATTCAGGTTTCTACTACGCGCGAT
LOC_Os05g43810
OsAffx.26001.4.S1_at--1001--3131Chr05:25384191..25384215 (25 bp)
AATTCAGGGCTATCCGAGCAACCGA
LOC_Os05g43810
OsAffx.26001.4.S1_at--435--1491Chr05:25384175..25384199 (25 bp)
AGCAACCGAGTTTCTACGACATCTT
LOC_Os05g43810
OsAffx.26001.4.S1_at--985--2791Chr05:25384142..25384166 (25 bp)
AAGATGGCGCGAACCGCATTGGCGA
LOC_Os05g43810
OsAffx.26001.4.S1_at--758--1731Chr05:25384086..25384110 (25 bp)
ACCATCGTGTTCTTGAGCCGGGACA
LOC_Os05g43810
OsAffx.26001.4.S1_at--375--8111Chr05:25384066..25384090 (25 bp)
GGACATGTTCCCCAATGGAGCTTAC
LOC_Os05g43810
OsAffx.26001.4.S1_at--143--2751Chr05:25383948..25383972 (25 bp)
AAGAAGCTGCATCGCCAGATGGCCT
LOC_Os05g43810
OsAffx.26001.4.S1_at--1021--8451Chr05:25383929..25383953 (25 bp)
TGGCCTCTGGGCTCTGGGACTATGA
LOC_Os05g43810
OsAffx.26001.4.S1_at--241--7631Chr05:25383914..25383938 (25 bp)
GGGACTATGATCCAGGCTCTAGGCT
LOC_Os05g43810
Target Sequence 
GGTTCCATAATCCAGTGTCGTTCCTGCACTCTCTTGGCCCCGGCACATTTGCAGCACAATCAGATGAATTCAATCAAACT
GGACCCATAAACATGCCACGCCGGCTGAATTCAGGTTTCTACTACGCGCGATCAGACGACGCCACCATCACCGCAATGGA
GATGATAGTAAAACATGCAACAAATTCAGGGCTATCCGAGCAACCGAGTTTCTACGACATCTTGTGCGGGAAAGATGGCG
CGAACCGCATTGGCGACGACAGATGCCTGGAGCCCAGCACGAACCTCACCATCGTGTTCTTGAGCCGGGACATGTTCCCC
AATGGAGCTTACGGTGGCCTCTGGGAGAAGAAGCATGGTGTGAGCTCAGCTTGCAGGGAGCTTGGGTGTGTGATCATACA
CAACAACTGGGTGAATGGGAGGAGGAAGAAGCTGCATCGCCAGATGGCCTCTGGGCTCTGGGACTATGATCCAGGCTCTA
GGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26001.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis