Browse Element(s) Details


OsAffx.2609.2.A1_at

Description tigr:9630.m01372
TID=OsAffx.2609.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g401203/11expressed protein
LOC_Os07g390101/11lactose permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2609.2.A1_at--571--7691Chr02:8134533..8134557 (25 bp)
GGGTATGCAAAAACAACGCGTCCAA
NONE
OsAffx.2609.2.A1_at--335--611Chr02:8134529..8134553 (25 bp)
ATGCAAAAACAACGCGTCCAAGGAG
NONE
OsAffx.2609.2.A1_at--602--7613Chr02:28220924..28220948 (25 bp)
GGGAACGATGCCAAACGGCGTCGCC
NONE
OsAffx.2609.2.A1_at--663--5453Chr02:28220926..28220950 (25 bp)
GAACGATGCCAAACGGCGTCGCCGT
NONE
OsAffx.2609.2.A1_at--330--4654Chr05:19833269..19833392 (25 bp)
GCGTCGCCGTTGTCAGCCGGTCAAA
NONE
OsAffx.2609.2.A1_at--172--9331Chr02:8134484..8134508 (25 bp)
TCGCCGTTGTCAGCCGGTCAAATGG
NONE
OsAffx.2609.2.A1_at--797--6591Chr02:8134479..8134503 (25 bp)
GTTGTCAGCCGGTCAAATGGCTCGG
NONE
OsAffx.2609.2.A1_at--878--8731Chr02:8134477..8134501 (25 bp)
TGTCAGCCGGTCAAATGGCTCGGCA
NONE
OsAffx.2609.2.A1_at--1127--4491Chr02:8134248..8134272 (25 bp)
GCCGATGTACCGTCGGCCGGATGAT
NONE
OsAffx.2609.2.A1_at--347--1792Chr01:30539655..30539768 (25 bp)
ACCGTCGGCCGGATGATGGCCTTCA
NONE
OsAffx.2609.2.A1_at--983--5318Chr12:23622758..23622782 (25 bp)
ATCGCCGCCATAGGTACCATCGTCG
NONE
Target Sequence 
GGGTATGCAAAAACAACGCGTCCAAGGAGGGGAACGATGCCAAACGGCGTCGCCGTTGTCAGCCGGTCAAATGGCTCGGC
AAGGCTTTCGCCCGCGATTCCCTGTCCAAACCCACACCACCAATCCGCACAAGAAGGATCGTCGTCGGTCAACAACATTG
TCCCTTCAACGATTCGGCCAAGGCCACCGCCCACAATTGTTCCCGCCGTCGACGGCGCGCCCGCACCCGGACTCCTCATT
TCCTGCCGCCAGACCCCTTCCCCGCCTCCACATACCGCCGCCGCCGCCGATGTACCGTCGGCCGGATGATGGCCTTCAAC
CATCGCCGCCATAGGTACCATCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2609.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis