Browse Element(s) Details


OsAffx.26166.1.S1_at

Description tigr:9632.m02500
TID=OsAffx.26166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2660011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26550Os.53294.1.S1_at11/114+15474803..15475853expressed protein
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein
LOC_Os04g26630OsAffx.26169.1.S1_at10/114+15510695..15512200hypothetical protein
LOC_Os04g26640OsAffx.13987.1.S1_at11/114+15516282..15517149hypothetical protein
LOC_Os04g26640Os.54523.1.S1_at2/114+15516282..15517149hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26166.1.S1_at--97--3291Chr04:15495699..15495723 (25 bp)
CAAACCGCTCGGACGAGATTCCCGA
LOC_Os04g26600
OsAffx.26166.1.S1_at--879--6011Chr04:15495713..15495737 (25 bp)
GAGATTCCCGAGATTTCTTCACCTT
LOC_Os04g26600
OsAffx.26166.1.S1_at--736--9671Chr04:15495731..15495755 (25 bp)
TCACCTTCGTCAAGATTCTCATCAA
LOC_Os04g26600
OsAffx.26166.1.S1_at--1146--9511Chr04:15495747..15495771 (25 bp)
TCTCATCAAACTCTGGTTCACCAAT
LOC_Os04g26600
OsAffx.26166.1.S1_at--194--3071Chr04:15495769..15495793 (25 bp)
AATCTTCCCTCCAATCAGCATGCGA
LOC_Os04g26600
OsAffx.26166.1.S1_at--323--1531Chr04:15495785..15495809 (25 bp)
AGCATGCGACTTCCAGACAACCTTG
LOC_Os04g26600
OsAffx.26166.1.S1_at--977--5611Chr04:15495800..15495824 (25 bp)
GACAACCTTGCAACGATATTCGGAT
LOC_Os04g26600
OsAffx.26166.1.S1_at--1053--211Chr04:15495815..15495839 (25 bp)
ATATTCGGATCAAGATCGCCTTCCC
LOC_Os04g26600
OsAffx.26166.1.S1_at--82--9451Chr04:15495918..15495942 (25 bp)
TCGGATCGTGCTCATCTACGGATAT
LOC_Os04g26600
OsAffx.26166.1.S1_at--394--8871Chr04:15495943..15495967 (25 bp)
TGATGAGTACCTCAGCTCTACTAGC
LOC_Os04g26600
OsAffx.26166.1.S1_at--30--1711Chr04:15495980..15496004 (25 bp)
ACCAACACCGTGATCATCGACTATG
LOC_Os04g26600
Target Sequence 
CAAACCGCTCGGACGAGATTCCCGAGATTTCTTCACCTTCGTCAAGATTCTCATCAAACTCTGGTTCACCAATCTTCCCT
CCAATCAGCATGCGACTTCCAGACAACCTTGCAACGATATTCGGATCAAGATCGCCTTCCCCCCCCACTCGGATCGTGCT
CATCTACGGATATTGATGAGTACCTCAGCTCTACTAGCGCTAGCTCCTACACCAACACCGTGATCATCGACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis