Browse Element(s) Details


OsAffx.26167.1.S1_at

Description tigr:9632.m02501
TID=OsAffx.26167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2661011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26550Os.53294.1.S1_at11/114+15474803..15475853expressed protein
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein
LOC_Os04g26620OsAffx.26168.1.S1_x_at11/114+15502316..15502789hypothetical protein
LOC_Os04g26630OsAffx.26169.1.S1_at10/114+15510695..15512200hypothetical protein
LOC_Os04g26640OsAffx.13987.1.S1_at11/114+15516282..15517149hypothetical protein
LOC_Os04g26640Os.54523.1.S1_at2/114+15516282..15517149hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26167.1.S1_at--1143--6051Chr04:15498211..15498235 (25 bp)
GAGTTGCTGACACTACAAGATCTTA
LOC_Os04g26610
OsAffx.26167.1.S1_at--494--1271Chr04:15498228..15498252 (25 bp)
AGATCTTATTGACTCAGCCGTGCAC
LOC_Os04g26610
OsAffx.26167.1.S1_at--321--9731Chr04:15498267..15498291 (25 bp)
TCAATCTGGTGTGATGGTCAATACA
LOC_Os04g26610
OsAffx.26167.1.S1_at--1161--5831Chr04:15498334..15498358 (25 bp)
GAGCATAAAATTACAGGGCCAACTT
LOC_Os04g26610
OsAffx.26167.1.S1_at--719--11Chr04:15498348..15498372 (25 bp)
AGGGCCAACTTATCTCCAAAACAAT
LOC_Os04g26610
OsAffx.26167.1.S1_at--1134--6831Chr04:15498373..15498397 (25 bp)
GTTTCCCACAATATAGAGACGTCAA
LOC_Os04g26610
OsAffx.26167.1.S1_at--208--7611Chr04:15498407..15498431 (25 bp)
GGGAAGTGGCCAACCTCAAGTCAAC
LOC_Os04g26610
OsAffx.26167.1.S1_at--184--2851Chr04:15498424..15498448 (25 bp)
AAGTCAACCCTGCATCGGCTCCAAG
LOC_Os04g26610
OsAffx.26167.1.S1_at--963--4971Chr04:15498435..15498459 (25 bp)
GCATCGGCTCCAAGAACAACAGTAC
LOC_Os04g26610
OsAffx.26167.1.S1_at--933--1171Chr04:15498455..15498479 (25 bp)
AGTACCTTCGACAACAACCAATCAA
LOC_Os04g26610
OsAffx.26167.1.S1_at--129--2651Chr04:15498470..15498494 (25 bp)
AACCAATCAAGTGCCGGTTTCAGGG
LOC_Os04g26610
Target Sequence 
GAGTTGCTGACACTACAAGATCTTATTGACTCAGCCGTGCACCATGCTTTAATCAATCAATCTGGTGTGATGGTCAATAC
ACTGACTAATATGATCAAGTCTGTGGTTGATGGATTAACTGTTGAGCATAAAATTACAGGGCCAACTTATCTCCAAAACA
ATGTTTCCCACAATATAGAGACGTCAAGACCAATTTGGGAAGTGGCCAACCTCAAGTCAACCCTGCATCGGCTCCAAGAA
CAACAGTACCTTCGACAACAACCAATCAAGTGCCGGTTTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis