Browse Element(s) Details


OsAffx.26212.1.S1_at

Description tigr:9632.m02695
TID=OsAffx.26212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2854011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28530NANA4+16710335..16710568hypothetical protein
LOC_Os04g28540OsAffx.26212.1.S1_at11/114+16713090..16713362hypothetical protein
LOC_Os04g28550OsAffx.31777.2.S1_x_at1/114+16716060..16718649Transposable element protein, putative, Transposase_28
LOC_Os04g28560Os.1709.1.S1_x_at4/114+16720471..16726141retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28570OsAffx.14016.1.S1_at11/114+16728217..16729885fatty acyl coA reductase, putative
LOC_Os04g28580Os.45774.1.S1_at11/114+16732222..16736189transposon protein, putative, unclassified, expressed
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26212.1.S1_at--1043--4051Chr04:16713159..16713183 (25 bp)
CGATGGAGGCCGGCGAAGATCATCT
LOC_Os04g28540
OsAffx.26212.1.S1_at--636--4591Chr04:16713171..16713195 (25 bp)
GCGAAGATCATCTGCACTCGGCGGA
LOC_Os04g28540
OsAffx.26212.1.S1_at--419--2811Chr04:16713174..16713198 (25 bp)
AAGATCATCTGCACTCGGCGGAGAA
LOC_Os04g28540
OsAffx.26212.1.S1_at--1104--411Chr04:16713177..16713201 (25 bp)
ATCATCTGCACTCGGCGGAGAAGCT
LOC_Os04g28540
OsAffx.26212.1.S1_at--447--9571Chr04:16713250..16713274 (25 bp)
TCTTGAGGCGGCGAGAACCCACTTC
LOC_Os04g28540
OsAffx.26212.1.S1_at--737--8871Chr04:16713253..16713277 (25 bp)
TGAGGCGGCGAGAACCCACTTCCGT
LOC_Os04g28540
OsAffx.26212.1.S1_at--427--5971Chr04:16713262..16713286 (25 bp)
GAGAACCCACTTCCGTTGTGGAGGA
LOC_Os04g28540
OsAffx.26212.1.S1_at--1072--5411Chr04:16713264..16713288 (25 bp)
GAACCCACTTCCGTTGTGGAGGATG
LOC_Os04g28540
OsAffx.26212.1.S1_at--850--991Chr04:16713283..16713307 (25 bp)
AGGATGCAGAGGAATACCAGCGGCT
LOC_Os04g28540
OsAffx.26212.1.S1_at--401--9051Chr04:16713287..16713311 (25 bp)
TGCAGAGGAATACCAGCGGCTCCGC
LOC_Os04g28540
OsAffx.26212.1.S1_at--1117--1311Chr04:16713290..16713314 (25 bp)
AGAGGAATACCAGCGGCTCCGCTCG
LOC_Os04g28540
Target Sequence 
CGATGGAGGCCGGCGAAGATCATCTGCACTCGGCGGAGAAGCTCCAACGGCAGGAGGGGGCTGTCGCGACGGATGCTCGG
TGGGGAGGGGATCTTGAGGCGGCGAGAACCCACTTCCGTTGTGGAGGATGCAGAGGAATACCAGCGGCTCCGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis