Browse Element(s) Details


OsAffx.26288.1.S1_at

Description tigr:9632.m03110
TID=OsAffx.26288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26288.1.S1_at--558--4231Chr04:19424464..19424488 (25 bp)
CCGATGATGCTAACGTGAAACCTAT
LOC_Os04g32580
OsAffx.26288.1.S1_at--535--5551Chr04:19424528..19424552 (25 bp)
GAAACGTGTCAAGTTTGCTGCTGAT
LOC_Os04g32580
OsAffx.26288.1.S1_at--909--10491Chr04:19424554..19424578 (25 bp)
TTAAGGACCAATCGGCAGAGCTGCC
LOC_Os04g32580
OsAffx.26288.1.S1_at--775--7971Chr04:19424585..19424609 (25 bp)
GGATGAAGATTCTCCCATGGTTCCT
LOC_Os04g32580
OsAffx.26288.1.S1_at--344--831Chr04:19424601..19424625 (25 bp)
ATGGTTCCTCAATCCATGGATTTGG
LOC_Os04g32580
OsAffx.26288.1.S1_at--861--251Chr04:19424628..19424652 (25 bp)
ATAGGGAAGGACTCATCCACTCCAT
LOC_Os04g32580
OsAffx.26288.1.S1_at--872--10171Chr04:19424697..19424721 (25 bp)
TATACACGTTACACTCTGGACACTC
LOC_Os04g32580
OsAffx.26288.1.S1_at--994--2371Chr04:19424737..19424761 (25 bp)
AAACTAACAGGAGAGCTTTTGCCGA
LOC_Os04g32580
OsAffx.26288.1.S1_at--652--4891Chr04:19424751..19424775 (25 bp)
GCTTTTGCCGACCTGCATGATATAT
LOC_Os04g32580
OsAffx.26288.1.S1_at--657--2391Chr04:19424900..19424924 (25 bp)
AAACTCATCTCTCATTGGTCTGGCG
LOC_Os04g32580
OsAffx.26288.1.S1_at--684--4691Chr04:19424922..19424946 (25 bp)
GCGGCAGGTGCCTCTGATGAAACTG
LOC_Os04g32580
Target Sequence 
CCGATGATGCTAACGTGAAACCTATACTGAAGCGGAAGGAGGAGCAAGGCGATTCAAAGCCAAGGAAACGTGTCAAGTTT
GCTGCTGATGTTAAGGACCAATCGGCAGAGCTGCCTGAACAGGATGAAGATTCTCCCATGGTTCCTCAATCCATGGATTT
GGTCATAGGGAAGGACTCATCCACTCCATCTGAGTCTCCTGGGGTTCCTGACTATGTTAAGAACCCTGCAAAGTATACAC
GTTACACTCTGGACACTCCAGAATGTAACGATGAAACTAACAGGAGAGCTTTTGCCGACCTGCATGATATATTAAGGAGA
ATGGAACCAGAGCCTGAGGCACCACCAGTTGAGATACCTACTTCAGTTACGTTCATCCCACGGAAGAAGACAATCGATGC
AATGACAGTAGATGAGGGTCCCAAATCCAATGATGCAAACTCATCTCTCATTGGTCTGGCGGCAGGTGCCTCTGATGAAA
CTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis