Browse Element(s) Details


OsAffx.26305.1.S1_at

Description tigr:9632.m03189
TID=OsAffx.26305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3332010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26305.1.S1_at--460--7453Chr06:11812705..11813114 (25 bp)
GTGTCACATCTCGTACTTTATATTT
NONE
OsAffx.26305.1.S1_at--653--5191Chr04:19973807..19973831 (25 bp)
GCAATCTTGAGTTATTTTTCTATCG
LOC_Os04g33320
OsAffx.26305.1.S1_at--365--10291Chr04:19973791..19973815 (25 bp)
TTTCTATCGAAAAGCCCCTGGACCT
LOC_Os04g33320
OsAffx.26305.1.S1_at--25--2671Chr04:19973780..19973804 (25 bp)
AAGCCCCTGGACCTTGATACATTAT
LOC_Os04g33320
OsAffx.26305.1.S1_at--15--9891Chr04:19973764..19973787 (24 bp)
TACATTATCGTGGTTGCTGCGGCAC
LOC_Os04g33320
OsAffx.26305.1.S1_at--1075--1631Chr04:19973614..19973638 (25 bp)
AGCGAGGCAAGCACATGGAATGCAA
LOC_Os04g33320
OsAffx.26305.1.S1_at--585--2991Chr04:19973596..19973620 (25 bp)
AATGCAAAGCAGTGGCGAAAGCCCT
LOC_Os04g33320
OsAffx.26305.1.S1_at--1025--5551Chr04:19973580..19973604 (25 bp)
GAAAGCCCTTCTAATGGCCTGCAAC
LOC_Os04g33320
OsAffx.26305.1.S1_at--636--8411Chr04:19973565..19973589 (25 bp)
GGCCTGCAACCTGCCCATAGGTAGA
LOC_Os04g33320
OsAffx.26305.1.S1_at--475--4331Chr04:19973551..19973575 (25 bp)
CCATAGGTAGAAGGGAGCGTGTCAA
LOC_Os04g33320
OsAffx.26305.1.S1_at--818--3991NONE
CGTGGAGGCGGATCTCCCAGATCTA
NONE
Target Sequence 
GTGTCACATCTCGTACTTTATATTTATTTTGAAACAGATGGAGTGCAATGTTAGAGCAGAAAATTACATATGTACCATTG
AAATTAGAAATGATTTTGCAATCTTGAGTTATTTTTCTATCGAAAAGCCCCTGGACCTTGATACATTATCGTGGTTGCTG
CGGCACGGAGAGGAGCGAGGCAAGCACATGGAATGCAAAGCAGTGGCGAAAGCCCTTCTAATGGCCTGCAACCTGCCCAT
AGGTAGAAGGGAGCGTGTCAAGGACCGTGGAGGCGGATCTCCCAGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis