Browse Element(s) Details


OsAffx.26306.1.S1_s_at

Description tigr:9632.m03191
TID=OsAffx.26306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3334011/11hypothetical protein
LOC_Os06g1678011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26306.1.S1_s_at--383--8412Chr06:9713093..9713117 (25 bp)
GGCCCCAATGGACTACCGGCGGCAA
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--326--912Chr06:9713256..9713280 (25 bp)
AGGCGTGCACGCTGTCATGCAGCAG
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--839--7312Chr06:9713260..9713284 (25 bp)
GTGCACGCTGTCATGCAGCAGCATG
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--1134--3512Chr06:9713271..9713295 (25 bp)
CATGCAGCAGCATGACCAGCTCGTC
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--786--8052Chr06:9713328..9713352 (25 bp)
GGAGAGGTTGACTGCCGCTGGCGTC
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--987--6172Chr06:9713359..9713383 (25 bp)
GAGGAGTTGGTTGCGGCGGTCAGGA
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--647--5892Chr06:9713468..9713492 (25 bp)
GAGCTGCACCACAAGGTCTCGCCGA
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--775--592Chr06:9713492..9713516 (25 bp)
ATGCCGTCGACGTTGACGGACTCAA
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--369--9372Chr06:9713498..9713522 (25 bp)
TCGACGTTGACGGACTCAAGCGCGC
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--99--9732Chr06:9713513..9713537 (25 bp)
TCAAGCGCGCGGACGATGAGCGGCC
LOC_Os06g16780
OsAffx.26306.1.S1_s_at--436--5852Chr06:9713631..9713655 (25 bp)
GACCACGAGGCGACGAGCTGACGAC
LOC_Os06g16780
Target Sequence 
GGCCCCAATGGACTACCGGCGGCAAGAAGGACAGGAAGGGCAAGGAGTACAGAGGCGTGCACGCTGTCATGCAGCAGCAT
GACCAGCTCGTCGTCATGGCCGCTTCGCCGGCGGCACCGGAGGCGGAGAGGTTGACTGCCGCTGGCGTCGCCAAGGAGGA
GTTGGTTGCGGCGGTCAGGATTCAGGCGGCGGAGGTGATGCGCGTGGCGGCGCCGCGACGGGGCGAGGGGCAGCACGTGC
TGCTCGGCACCGCCGGCGAAACCCGAGCTGCACCACAAGGTCTCGCCGATGCCGTCGACGTTGACGGACTCAAGCGCGCG
GACGATGAGCGGCCGCCGGCCGGCTCGATGACTACTCCGCCGCGGCGTCCGAGGCCAGTGGGCGCCAACACCGCGTTGCA
GCGGCTGCAGTTGCCGCCGCCAATGGCGACCACGAGGCGACGAGCTGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26306.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis