Browse Element(s) Details


OsAffx.26413.1.S1_at

Description tigr:9632.m03932
TID=OsAffx.26413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g412809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26413.1.S1_at--191--4532Chr04:24278699..24278723 (25 bp)
GCCGCGCGGACGTGAACTACGCCGG
LOC_Os04g41280
OsAffx.26413.1.S1_at--958--9411NONE
TCGTCCGTGCGCTGCTTGCAGATGA
NONE
OsAffx.26413.1.S1_at--756--9151NONE
TGCGCTGCTTGCAGATGAGCTCGCA
NONE
OsAffx.26413.1.S1_at--207--3851Chr04:24280561..24281036 (25 bp)
CTGCTTGCAGATGAGCTCGCACGGG
LOC_Os04g41280
OsAffx.26413.1.S1_at--341--8451Chr04:24281035..24281059 (25 bp)
GGCCACGGCCATGAGGGCCTCTGTA
LOC_Os04g41280
OsAffx.26413.1.S1_at--326--3511Chr04:24281044..24281068 (25 bp)
CATGAGGGCCTCTGTACGACTGTAC
LOC_Os04g41280
OsAffx.26413.1.S1_at--287--6131Chr04:24281047..24281071 (25 bp)
GAGGGCCTCTGTACGACTGTACCGG
LOC_Os04g41280
OsAffx.26413.1.S1_at--172--8751Chr04:24281056..24281080 (25 bp)
TGTACGACTGTACCGGCGCGTTCCA
LOC_Os04g41280
OsAffx.26413.1.S1_at--1016--8751Chr04:24281064..24281088 (25 bp)
TGTACCGGCGCGTTCCATGGCCTCT
LOC_Os04g41280
OsAffx.26413.1.S1_at--27--4351Chr04:24281078..24281102 (25 bp)
CCATGGCCTCTGCAAAAGATCAATA
LOC_Os04g41280
OsAffx.26413.1.S1_at--866--871Chr04:24281080..24281104 (25 bp)
ATGGCCTCTGCAAAAGATCAATAAA
LOC_Os04g41280
Target Sequence 
GCCGCGCGGACGTGAACTACGCCGGGGTGGTGTGGCTCAAGGCGCGGCGGGTGGCGGAGGCCGCGCTGCGGGACGGCGCC
GCCGCTGAGCTGCGGGCGGCGCACGAGGAGATCCGCGCCGACGTGTCGCCGCTCTTCCTCGCCGCCGGCAACGGGGACGC
CGCGCTCGTCCGTGCGCTGCTTGCAGATGAGCTCGCACGGGCCACGGCCATGAGGGCCTCTGTACGACTGTACCGGCGCG
TTCCATGGCCTCTGCAAAAGATCAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis