Browse Element(s) Details


OsAffx.26457.1.S1_at

Description tigr:9632.m04252
TID=OsAffx.26457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26457.1.S1_at--941--5511Chr04:26022764..26022788 (25 bp)
GAAAATGACACCTGCTTGGTCGCCA
LOC_Os04g44310
OsAffx.26457.1.S1_at--988--10831Chr04:26022779..26022803 (25 bp)
TTGGTCGCCAATGCATCCGAAGTTC
LOC_Os04g44310
OsAffx.26457.1.S1_at--677--9051Chr04:26022790..26022814 (25 bp)
TGCATCCGAAGTTCCAAACGGGATT
LOC_Os04g44310
OsAffx.26457.1.S1_at--356--31Chr04:26022812..26022836 (25 bp)
ATTGGTGATGCTGGCGCATGGTCAC
LOC_Os04g44310
OsAffx.26457.1.S1_at--639--611Chr04:26022819..26022843 (25 bp)
ATGCTGGCGCATGGTCACGGAAGAT
LOC_Os04g44310
OsAffx.26457.1.S1_at--359--151Chr04:26022885..26022909 (25 bp)
ATTATCATCATATGAGGAGGCCATC
LOC_Os04g44310
OsAffx.26457.1.S1_at--305--5331Chr04:26022932..26022956 (25 bp)
GAAGTGGCGCCACACACTGATGCAT
LOC_Os04g44310
OsAffx.26457.1.S1_at--92--2191Chr04:26022945..26022969 (25 bp)
ACACTGATGCATGGGCGTTTGACTC
LOC_Os04g44310
OsAffx.26457.1.S1_at--21--4631Chr04:26022959..26022983 (25 bp)
GCGTTTGACTCGACGGTTTCCACAT
LOC_Os04g44310
OsAffx.26457.1.S1_at--628--5751Chr04:26022970..26022994 (25 bp)
GACGGTTTCCACATCTGGAGAGAAC
LOC_Os04g44310
OsAffx.26457.1.S1_at--708--1991Chr04:26022993..26023017 (25 bp)
ACTCGAGGAGACAATTCAGCTGCAT
LOC_Os04g44310
Target Sequence 
GAAAATGACACCTGCTTGGTCGCCAATGCATCCGAAGTTCCAAACGGGATTGGTGATGCTGGCGCATGGTCACGGAAGAT
GCAAGTTAGGAGAACACAAGCAATCCAATTTATAGACAAACATTATCATCATATGAGGAGGCCATCAGACTGGGGAACAA
TGGGAGAGGAAGTGGCGCCACACACTGATGCATGGGCGTTTGACTCGACGGTTTCCACATCTGGAGAGAACTCGAGGAGA
CAATTCAGCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis