Browse Element(s) Details


OsAffx.26480.1.S1_s_at

Description tigr:9632.m04435
TID=OsAffx.26480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to WRKY-like DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4606011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed
LOC_Os04g46060Os.53641.1.S1_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46060OsAffx.26480.1.S1_s_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26480.1.S1_s_at--500--1251Chr04:27071644..27071668 (25 bp)
AGTTGGAGACGGCTTGCCTCCCTGC
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--521--3671Chr04:27071571..27071595 (25 bp)
CTTTCTTGCGCCATTGCCGAGCCTG
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--768--71Chr04:27071559..27071583 (25 bp)
ATTGCCGAGCCTGCAGCACAAGCTT
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--78--4371Chr04:27071497..27071521 (25 bp)
CCACCGGGACGAACCATGGCGTGAT
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--96--2651Chr04:27071486..27071510 (25 bp)
AACCATGGCGTGATGTTCTCGTCGG
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--724--8871Chr04:27071476..27071500 (25 bp)
TGATGTTCTCGTCGGACCATGGCTG
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--639--7191Chr04:27071466..27071490 (25 bp)
GTCGGACCATGGCTGCCTGTACCCG
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--949--2611Chr04:27071378..27071402 (25 bp)
AAGCCCGCCGGTTTCGCGCACTTGG
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--708--6491Chr04:27071215..27071239 (25 bp)
GATAGCGAGATTGCTGCAGCTGCCA
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--727--5151Chr04:27071188..27071212 (25 bp)
GCAACCACTTGCCATGGGCCTAATT
LOC_Os04g46060
OsAffx.26480.1.S1_s_at--401--4431Chr04:27071181..27071202 (22 bp)
GCCATGGGCCTAATTCATGGTGGAA
LOC_Os04g46060
Target Sequence 
AGTTGGAGACGGCTTGCCTCCCTGCCGCGCTCTACGCGCCGCTCTGCCCGTACACGCCGCCTTCCCCTCCTTCCTTTCTT
GCGCCATTGCCGAGCCTGCAGCACAAGCTTCCCCAGCTGCCGCAGCTGGTCCACGACCACGCCGCCGCCACCGGGACGAA
CCATGGCGTGATGTTCTCGTCGGACCATGGCTGCCTGTACCCGCTGCTCCCGGGGATCCCGTTCTGCCTCGACTCCGGCT
GCGGCGCCGCCGCCTGCGACGACGACAAGCCCGCCGGTTTCGCGCACTTGGGCTCCGCCGAGGCGGACACATCGGCGGCG
GCGGCGAGAGTGGATAGCGAGATTGCTGCAGCTGCCACCGCAACCACTTGCCATGGGCCTAATTCATGGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26480.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis