Browse Element(s) Details


OsAffx.26522.2.S1_at

Description tigr:9637.m03264
TID=OsAffx.26522.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3826811/11RNA polymerase Rpb1, domain 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38200NANA9+22000708..22005426retrotransposon protein, putative, unclassified
LOC_Os09g38210Os.13580.1.A1_at4/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38210Os.49579.1.S1_at1/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38239Os.15407.1.S1_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38239OsAffx.30188.1.S1_s_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38268OsAffx.26522.2.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38268Os.54279.1.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38300OsAffx.6517.1.S1_at11/119+22034063..22035817Kelch motif family protein
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0031047biological_processRNA-mediated gene silencing
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26522.2.S1_at--722--5731Chr09:22019068..22019170 (25 bp)
GACTGTGATGGTCATTTCGGTGTTA
LOC_Os09g38268
OsAffx.26522.2.S1_at--855--7391Chr09:22019155..22019174 (20 bp)
GTGATGGTCATTTCGGTGTTATTAA
LOC_Os09g38268
OsAffx.26522.2.S1_at--188--10211Chr09:22019169..22019193 (25 bp)
TATTAAGCTGGCAGCAACCGTGCAT
LOC_Os09g38268
OsAffx.26522.2.S1_at--1074--1611Chr09:22019174..22019198 (25 bp)
AGCTGGCAGCAACCGTGCATAATCC
LOC_Os09g38268
OsAffx.26522.2.S1_at--313--5051Chr09:22019179..22019203 (25 bp)
GCAGCAACCGTGCATAATCCATGTT
LOC_Os09g38268
OsAffx.26522.2.S1_at--732--3251Chr09:22019183..22019207 (25 bp)
CAACCGTGCATAATCCATGTTTTAT
LOC_Os09g38268
OsAffx.26522.2.S1_at--52--8652Chr10:2227132..2227151 (20 bp)
TGGGACAACAATTCAGACAACTTGC
NONE
OsAffx.26522.2.S1_at--411--7771Chr09:22020131..22020155 (25 bp)
GGTGACACATAATTCCAAGAACAAA
LOC_Os09g38268
OsAffx.26522.2.S1_at--636--1751Chr09:22020197..22020221 (25 bp)
ACCTGATGATAACCAACCACCTCAA
LOC_Os09g38268
OsAffx.26522.2.S1_at--510--9691Chr09:22020206..22020230 (25 bp)
TAACCAACCACCTCAATCCAATGTG
LOC_Os09g38268
OsAffx.26522.2.S1_at--133--3371Chr09:22020214..22020238 (25 bp)
CACCTCAATCCAATGTGGCTAAGAA
LOC_Os09g38268
Target Sequence 
GACTGTGATGGTCATTTCGGTGTTATTAAGCTGGCAGCAACCGTGCATAATCCATGTTTTATTGAGGAAGTTGTCCAGTT
GCTGAATCAGATATGTCCAGGCTGTCTCACTCTGAAGCAAAATGGGGACACAAAGAAGACTGATGGGACAACAATTCAGA
CAACTTGCAAGTATTGCTCAAAGGATGGAGCAAAACTTTACCCTAGTGTAATCTTTAAGATGCTAACAAGTCCAAGAGTA
ACACTATCCAGGAGTAAACTTCACCGTAACACTAGTGTGATGGACAAAATTTCAATTATCGCAGAAGTTGCTGGTGGGGT
GACACATAATTCCAAGAACAAAGCTCCCCATGAAACCCTTCCCCAAGATTTCTGGGATTTCGTACCTGATGATAACCAAC
CACCTCAATCCAATGTGGCTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26522.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis