Browse Element(s) Details


OsAffx.26546.1.S1_at

Description tigr:9632.m04866
TID=OsAffx.26546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5009010/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g169701/11Rab GDP dissociation inhibitor alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed
LOC_Os04g50120Os.14686.1.S1_at10/114+29675725..29677758expressed protein
LOC_Os04g50130NANA4+29680323..29680751transposon protein, putative, unclassified
LOC_Os04g50140NANA4+29683113..29685630retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045449biological_processregulation of transcription
GO:0048227biological_processplasma membrane to endosome transport
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26546.1.S1_at--440--5871Chr04:29659901..29659925 (25 bp)
GAGCCCAAGTGTGATGCCGCGGACT
LOC_Os04g50090
OsAffx.26546.1.S1_at--62--8671Chr04:29659910..29659934 (25 bp)
TGTGATGCCGCGGACTCCACGAGCG
LOC_Os04g50090
OsAffx.26546.1.S1_at--890--1851Chr04:29659928..29659952 (25 bp)
ACGAGCGCGGCCGATCAGGAGACTC
LOC_Os04g50090
OsAffx.26546.1.S1_at--781--831Chr04:29659983..29660007 (25 bp)
ATGGACCGCCGTTCGCGCGGTTCTT
LOC_Os04g50090
OsAffx.26546.1.S1_at--312--8671Chr04:29660025..29660049 (25 bp)
TGTGGTGCCACAACCCGGCGCAGGA
LOC_Os04g50090
OsAffx.26546.1.S1_at--37--10851Chr04:29660115..29660139 (25 bp)
TTGTGGAGACGCACGCCAGCATCCG
LOC_Os04g50090
OsAffx.26546.1.S1_at--780--1391Chr04:29660121..29660145 (25 bp)
AGACGCACGCCAGCATCCGGGTGAT
LOC_Os04g50090
OsAffx.26546.1.S1_at--650--391NONE
ATCAGCGTCAAGAGATTCCATGGCG
NONE
OsAffx.26546.1.S1_at--211--10851Chr04:29661422..29661446 (25 bp)
TTGGGTGTGTTCTTTCTCTGTGCTC
LOC_Os04g50090
OsAffx.26546.1.S1_at--1136--10571Chr04:29661435..29661459 (25 bp)
TTCTCTGTGCTCTGTATCTGTGGTA
LOC_Os04g50090
OsAffx.26546.1.S1_at--962--472Chr04:29661450..29661474 (25 bp)
ATCTGTGGTACAGTACTACAGTGGT
LOC_Os04g50090
Target Sequence 
GAGCCCAAGTGTGATGCCGCGGACTCCACGAGCGCGGCCGATCAGGAGACTCCGGCGGCGGCGGCGGCGGCGGCGGCGGC
TGATGGACCGCCGTTCGCGCGGTTCTTCACGTACCCGCAGTACGTGTGGTGCCACAACCCGGCGCAGGACGGCGGCGGGG
GCGGGGGCGCGGCGGCGGAGAACCGCGCCGGAGTGGCGGACATCGAGGTGAGCCTTGTGGAGACGCACGCCAGCATCCGG
GTGATGGCGGCGCGGCGGCCGGGGCAGCTGCTCAAGATGGTCGCCGGCCTGCAGGCGCTCCGGCTCACCGTCCTCCACCT
CAACGTCACGGCCCTCGGCTCGCTTGCCCTCTACTCCATCAGCGTCAAGAGATTCCATGGCGGAAAGGCCATTGCTTCCC
TTGGCCCCTTGGGTGTGTTCTTTCTCTGTGCTCTGTATCTGTGGTACAGTACTACAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis