Browse Element(s) Details


OsAffx.26569.1.S1_x_at

Description tigr:9632.m05038
TID=OsAffx.26569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5206011/11Transposable element protein, putative, Transposase_24, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26569.1.S1_x_at--59--7751Chr04:30702577..30702601 (25 bp)
GGTGATAAACCTGCAGATCCCGATG
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--341--1031Chr04:30702514..30702538 (25 bp)
AGGTACTATGGACTCACTGGCACCA
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--942--6031Chr04:30702469..30702493 (25 bp)
GAGATAGCAAAGTCCATCCCTGGTA
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--417--2831Chr04:30702430..30702454 (25 bp)
AAGTTCTCGCAGGAGGAGGTCCAAC
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--776--6291Chr04:30702404..30702428 (25 bp)
GATGATCAATCATGCTCTGCAAGGT
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--789--1491Chr04:30702342..30702366 (25 bp)
AGCAAAGTGTGCGTGGTGCGCCATT
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--934--7291Chr04:30702327..30702351 (25 bp)
GTGCGCCATTGTTAGGTGTTGATCA
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--813--7411Chr04:30702145..30702336 (25 bp)
GTGTTGATCATGAGACCCAAGAGAT
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--1068--6591Chr04:30702123..30702147 (25 bp)
GATTGATCTGGTGACTCTGCAGCAT
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--1109--5571Chr04:30701735..30701759 (25 bp)
GAAAGGCGTCAATCTGCGAGACACC
LOC_Os04g52060
OsAffx.26569.1.S1_x_at--728--4611Chr04:30701720..30701744 (25 bp)
GCGAGACACCACGACGACGATGACG
LOC_Os04g52060
Target Sequence 
GGTGATAAACCTGCAGATCCCGATGCTGCATGGATACAGCAGGTGGGGGGCCGGAACCGTGGGAGGTACTATGGACTCAC
TGGCACCATCGACAAGGCCAAAATCGCGGAGATAGCAAAGTCCATCCCTGGTAAAAGGGGTCAGCAGAAGTTCTCGCAGG
AGGAGGTCCAACAGATGATCAATCATGCTCTGCAAGGTTTAAATCAATCCTGGGAGGAGAAGTTTAAATCCCTGGAGCAA
AGTGTGCGTGGTGCGCCATTGTTAGGTGTTGATCATGAGACCCAAGAGATTGATCTGGTGACTCTGCAGCATGCCCCTGG
GTCTTCGGCAGCTGGAGGAGATGTTCAACAGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGC
GTCAATCTGCGAGACACCACGACGACGATGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis