Browse Element(s) Details


OsAffx.26582.1.S1_at

Description tigr:9632.m05131
TID=OsAffx.26582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5293011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26582.1.S1_at--46--8031Chr04:31310015..31310039 (25 bp)
GGAGGATTCGACTTATTGCCATGTT
LOC_Os04g52930
OsAffx.26582.1.S1_at--1053--7831Chr04:31309456..31309480 (25 bp)
GGTACTGACTACTTGGTTGGAACTT
LOC_Os04g52930
OsAffx.26582.1.S1_at--699--5331Chr04:31309383..31309407 (25 bp)
GAAGTCTTAGCTGACACCAACGCGA
LOC_Os04g52930
OsAffx.26582.1.S1_at--722--171Chr04:31309354..31309378 (25 bp)
ATTTTCTGGCGCTTTTTCTTGTCAC
LOC_Os04g52930
OsAffx.26582.1.S1_at--726--10551Chr04:31309339..31309363 (25 bp)
TTCTTGTCACTTGTTGGCTTGTGGC
LOC_Os04g52930
OsAffx.26582.1.S1_at--1098--8591Chr04:31309310..31309334 (25 bp)
TGGTCCATGCATTCTCTGATTTCAC
LOC_Os04g52930
OsAffx.26582.1.S1_at--889--10431Chr04:31309243..31309267 (25 bp)
TTATGATACACTGCATCCCGAGACC
LOC_Os04g52930
OsAffx.26582.1.S1_at--514--6411Chr04:31309181..31309205 (25 bp)
GATCTGAGTCTTCACTTCTTGTAGT
LOC_Os04g52930
OsAffx.26582.1.S1_at--355--10811Chr04:31309163..31309187 (25 bp)
TTGTAGTCAACCAGGCATTCTCTGC
LOC_Os04g52930
OsAffx.26582.1.S1_at--317--111Chr04:31309147..31309171 (25 bp)
ATTCTCTGCCGTGGTACATGCTGTT
LOC_Os04g52930
OsAffx.26582.1.S1_at--950--811Chr04:31309109..31309133 (25 bp)
ATGGTTATGTCCAGACCTTGAGGCA
LOC_Os04g52930
Target Sequence 
GGAGGATTCGACTTATTGCCATGTTTACTTAGAATTCAGCGTATTAGGGCAGTCAGAAATGCTGCTTCTGCAGTACATGA
TGAAGTACGAAGTGGAATGTCAACTGTATATCTACTGGGTACTGACTACTTGGTTGGAACTTGGTCACTTGGACTGTGAA
GGTACGGTGATTTGCAATTATTCATCACTTGAAGTCTTAGCTGACACCAACGCGAGTCCATTTTCTGGCGCTTTTTCTTG
TCACTTGTTGGCTTGTGGCCTGCTGGTCCATGCATTCTCTGATTTCACCAAGGACATTTGCAATTTCACTGTTGTTGCAT
TATATGGTACTTATGATACACTGCATCCCGAGACCATTGAACAGTGTAGAGCTAGTACAGGAGAGAAACACGGATCTGAG
TCTTCACTTCTTGTAGTCAACCAGGCATTCTCTGCCGTGGTACATGCTGTTGGTCGAGCAACCAATGGTTATGTCCAGAC
CTTGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis