Browse Element(s) Details


OsAffx.26598.2.S1_x_at

Description tigr:9631.m03756
TID=OsAffx.26598.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g391109/11expressed protein
LOC_Os03g166301/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g295401/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26598.2.S1_x_at--1122--4014Chr11:652278..652354 (24 bp)
CGTTCGAGTTCAGGTTCGGCGTCGT
NONE
OsAffx.26598.2.S1_x_at--1146--4511NONE
GCCGCGCCGCCGAAATACTTCAGCT
NONE
OsAffx.26598.2.S1_x_at--591--4511Chr03:21683496..21683517 (22 bp)
GCCGAAATACTTCAGCTTGCAAAAG
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--420--2071Chr03:21683458..21683482 (25 bp)
ACTTGGTGGAAGGTGGAAGTCACTC
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--878--5331Chr03:21683443..21683467 (25 bp)
GAAGTCACTCGACACAGTGCTGCTA
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--281--2851Chr03:21683442..21683466 (25 bp)
AAGTCACTCGACACAGTGCTGCTAG
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--319--1171Chr03:21683441..21683465 (25 bp)
AGTCACTCGACACAGTGCTGCTAGT
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--1101--7091Chr03:21683440..21683464 (25 bp)
GTCACTCGACACAGTGCTGCTAGTA
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--742--9691Chr03:21683439..21683463 (25 bp)
TCACTCGACACAGTGCTGCTAGTAA
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--153--3331Chr03:21683438..21683462 (25 bp)
CACTCGACACAGTGCTGCTAGTAAG
LOC_Os03g39110
OsAffx.26598.2.S1_x_at--467--3311Chr03:21683431..21683455 (25 bp)
CACAGTGCTGCTAGTAAGATACAAG
LOC_Os03g39110
Target Sequence 
CGTTCGAGTTCAGGTTCGGCGTCGTGTACTCCGGCGGGCGGCGGCGCCGCGGCGGAGTGGGAGGCGGGGTGGCGGCCGGC
GAGGTGGGGTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGCCGCCGTCAAGACGAAGCCGTACGTGGTCGCGAGGATCCG
CCGCGCCGCCGAAATACTTCAGCTTGCAAAAGATGATGAGATTAAACTTGGTGGAAGGTGGAAGTCACTCGACACAGTGC
TGCTAGTAAGATACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26598.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis