Browse Element(s) Details


OsAffx.2660.1.S1_at

Description tigr:9630.m01702
TID=OsAffx.2660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1807011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18040Os.45173.1.S1_x_at4/112+10464527..10476665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g18040OsAffx.20877.1.S1_at1/112+10464527..10476665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g18050NANA2+10479058..10480447hypothetical protein
LOC_Os02g18060OsAffx.20650.1.S1_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.2.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.27088.1.A1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.3.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18064Os.51841.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.54691.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.31929.2.S1_x_at2/112+10483366..10488682expressed protein
LOC_Os02g18064OsAffx.10222.1.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.23706.1.A1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.46012.3.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18070OsAffx.2660.1.S1_at11/112+10490444..10496411NB-ARC domain containing protein, expressed
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2660.1.S1_at--858--5371Chr02:10493317..10493341 (25 bp)
GAAGAAAGAACATCTGCCCGCCATT
LOC_Os02g18070
OsAffx.2660.1.S1_at--1041--1751Chr02:10493553..10493577 (25 bp)
ACCTGCCTCGTTGAACTGACAATGA
LOC_Os02g18070
OsAffx.2660.1.S1_at--1076--7431Chr02:10493582..10493606 (25 bp)
GTGTCACGGTATAGAATCCTTTCCA
LOC_Os02g18070
OsAffx.2660.1.S1_at--373--471Chr02:10493626..10493650 (25 bp)
ATCTCGCCTCACTCAAGGAATTGCA
LOC_Os02g18070
OsAffx.2660.1.S1_at--152--9031Chr02:10493647..10493671 (25 bp)
TGCACATTGCTGATTGCCCAGATCT
LOC_Os02g18070
OsAffx.2660.1.S1_at--814--4511Chr02:10493662..10493686 (25 bp)
GCCCAGATCTAGTTTCAATCGGTGC
LOC_Os02g18070
OsAffx.2660.1.S1_at--1100--491Chr02:10493679..10493703 (25 bp)
ATCGGTGCGGTGAAGCCAATCTCAA
LOC_Os02g18070
OsAffx.2660.1.S1_at--1129--6651Chr02:10493738..10493762 (25 bp)
GTTGACGACAGTAAAGCAGCCTTTC
LOC_Os02g18070
OsAffx.2660.1.S1_at--750--6831Chr02:10496063..10496087 (25 bp)
GTTTCTCTTTGTATGGAGCCGGTTA
LOC_Os02g18070
OsAffx.2660.1.S1_at--1153--9931Chr02:10496086..10496110 (25 bp)
TAGAGCGGGTCGAATAGGCCAATTA
LOC_Os02g18070
OsAffx.2660.1.S1_at--252--791Chr02:10496286..10496306 (21 bp)
ATGTGATGTCTTGATACTTCGGGAG
LOC_Os02g18070
Target Sequence 
GAAGAAAGAACATCTGCCCGCCATTGAGATTATTAAAATTTATTCTTGTACTGGGTTACTGTCCCTGCCCGGTGAAAGCC
TCACCTGCCTCGTTGAACTGACAATGATTAAGTGTCACGGTATAGAATCCTTTCCAAACCAAATGTGGAGAAGCAATCTC
GCCTCACTCAAGGAATTGCACATTGCTGATTGCCCAGATCTAGTTTCAATCGGTGCGGTGAAGCCAATCTCAAAAATAAA
GACGGTGTACATATATGAGTGTCAGAAGTTGACGACAGTAAAGCAGCCTTTCACCAGAAGAGGAAGGCCTTACCAAATTT
TGTCATTGCCAAATTTTGGTATGACTAATTTTGACAAGAGAAGTGGTGTTTCTCTTTGTATGGAGCCGGTTAGAGCGGGT
CGAATAGGCCAATTAGACCGATGTGATGTCTTGATACTTCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis