Browse Element(s) Details


OsAffx.26621.2.S1_at

Description tigr:9632.m05431
TID=OsAffx.26621.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5579011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26621.2.S1_at--342--6791Chr04:32992823..32992847 (25 bp)
GTTTTCCAAGGACGCATGGTCGTCG
LOC_Os04g55790
OsAffx.26621.2.S1_at--833--811Chr04:32992808..32992832 (25 bp)
ATGGTCGTCGAGGATCACTCCAATG
LOC_Os04g55790
OsAffx.26621.2.S1_at--331--9171Chr04:32992783..32992807 (25 bp)
TGCCCGGAGCACAACCAGTGGTTGA
LOC_Os04g55790
OsAffx.26621.2.S1_at--876--1731Chr04:32992695..32992719 (25 bp)
ACCATCGGCTGCAGCCAGGGTGAAG
LOC_Os04g55790
OsAffx.26621.2.S1_at--987--2791Chr04:32992667..32992691 (25 bp)
AAGAGGCCTTCTGCCACTGAGAGTG
LOC_Os04g55790
OsAffx.26621.2.S1_at--1083--1131Chr04:32992555..32992579 (25 bp)
AGTCCATGGAGAGCCTCGCTGAAAG
LOC_Os04g55790
OsAffx.26621.2.S1_at--428--4191Chr04:32992465..32992489 (25 bp)
CCCCGGGCAGCGAGTTGTGGTACAT
LOC_Os04g55790
OsAffx.26621.2.S1_at--1--7511Chr04:32992449..32992473 (25 bp)
GTGGTACATGGCAGCCCAACTGTTC
LOC_Os04g55790
OsAffx.26621.2.S1_at--357--2551Chr04:32992432..32992456 (25 bp)
AACTGTTCCGTGACGACGCATGCTG
LOC_Os04g55790
OsAffx.26621.2.S1_at--658--3531Chr04:32992414..32992438 (25 bp)
CATGCTGGCATCAGTTCTTCCTCGA
LOC_Os04g55790
OsAffx.26621.2.S1_at--664--7891Chr04:32992360..32992384 (25 bp)
GGTTCATTCAGGTCCACTGCAATTG
LOC_Os04g55790
Target Sequence 
GTTTTCCAAGGACGCATGGTCGTCGAGGATCACTCCAATGTGCCCGGAGCACAACCAGTGGTTGACCAGCAACCAGCACA
TCAACCAATGATCAATGTGGAGGACATTAGGGCACCACCCCTACCCCCACCATCGGCTGCAGCCAGGGTGAAGGGCAAGA
GGCCTTCTGCCACTGAGAGTGGAACTTCAGGGAGCTCTTCAAAGAGCAGGACATGCAGTGACTCCAGCGACGAGGCTCTC
CACAGGCTAGCTGATGATTCGAGGGTCGAGTCCATGGAGAGCCTCGCTGAAAGGGAGGAGGAGAAGAAGGTGAGAGGCTT
GGAGGCTTGCATGGACATGGTGGAGGCCGATGGATACCCCCCGGGCAGCGAGTTGTGGTACATGGCAGCCCAACTGTTCC
GTGACGACGCATGCTGGCATCAGTTCTTCCTCGACGATCGCCACACTGCAGAGTCTCGTCTCCGGTTCATTCAGGTCCAC
TGCAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26621.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis