Browse Element(s) Details


OsAffx.26678.1.S1_at

Description tigr:9633.m00062
TID=OsAffx.26678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=76034-74699
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g015109/11cytoplasmic membrane protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26678.1.S1_at--675--3751Chr05:279769..279793 (25 bp)
CTCTTGGTGTCACCCTTGGGATCTT
LOC_Os05g01510
OsAffx.26678.1.S1_at--678--7071Chr05:279777..279801 (25 bp)
GTCACCCTTGGGATCTTTCCGATAT
LOC_Os05g01510
OsAffx.26678.1.S1_at--819--1811Chr05:279780..279804 (25 bp)
ACCCTTGGGATCTTTCCGATATGTG
LOC_Os05g01510
OsAffx.26678.1.S1_at--716--7951NONE
GGATCTTTCCGATATGTGGGACCAC
NONE
OsAffx.26678.1.S1_at--402--9551NONE
TCTTTCCGATATGTGGGACCACTGT
NONE
OsAffx.26678.1.S1_at--114--791Chr05:280461..280481 (21 bp)
ATGTGGGACCACTGTTATTCTTTGT
LOC_Os05g01510
OsAffx.26678.1.S1_at--811--3331Chr05:280466..280490 (25 bp)
CACTGTTATTCTTTGTGGAGTTGCA
LOC_Os05g01510
OsAffx.26678.1.S1_at--1056--10211Chr05:280472..280496 (25 bp)
TATTCTTTGTGGAGTTGCAATAGCA
LOC_Os05g01510
OsAffx.26678.1.S1_at--762--2991Chr05:280496..280520 (25 bp)
AATGTTGGGAAGTAGCTGCAATGCT
LOC_Os05g01510
OsAffx.26678.1.S1_at--395--6971Chr05:280507..280531 (25 bp)
GTAGCTGCAATGCTGTTACTGTCAT
LOC_Os05g01510
OsAffx.26678.1.S1_at--389--4891Chr05:281533..281755 (25 bp)
GCTTATGGTCGACAGAGGCATATAT
LOC_Os05g01510
Target Sequence 
CTCTTGGTGTCACCCTTGGGATCTTTCCGATATGTGGGACCACTGTTATTCTTTGTGGAGTTGCAATAGCAATGTTGGGA
AGTAGCTGCAATGCTGTTACTGTCATGGTTCTAAATTTCGTTGTTACTCCCCTTGAGCTAAGCTTGATTGTCCCTTTCTT
GCGTTTCGGAGAAGTTATCACAGGCAGTGGACACTTCCCTTTGACTTCAGATGCATTCAAGAAGGTTATCACTGGCCAGG
CCTCAAAGGATGTGATGCTCAGCATTGTGCATGCGATGCTCGGGTGGCTGATCGCTGCACCGTTCGCACTTGCTGCGCTG
TACATGGTTTTCACCCCTTGTTTCAAGCTTATGGTCGACAGAGGCATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis