Browse Element(s) Details


OsAffx.26690.1.S1_at

Description tigr:9633.m00134
TID=OsAffx.26690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0217011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02150Os.55878.1.S1_at11/115+636154..638076Dof domain, zinc finger family protein, expressed
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26690.1.S1_at--746--4751Chr05:658180..658204 (25 bp)
GCTGAGCGCTACTCGATGGAGATTG
LOC_Os05g02170
OsAffx.26690.1.S1_at--502--831Chr05:658165..658189 (25 bp)
ATGGAGATTGGAGACTGCAGAACAG
LOC_Os05g02170
OsAffx.26690.1.S1_at--1087--1951Chr05:658152..658176 (25 bp)
ACTGCAGAACAGGAGAAGTGGAGAT
LOC_Os05g02170
OsAffx.26690.1.S1_at--360--4791Chr05:658118..658142 (25 bp)
GCTCGCCGGAGCTGGACTGCCGTGC
LOC_Os05g02170
OsAffx.26690.1.S1_at--540--9111Chr05:658088..658112 (25 bp)
TGCTGCGGTGCTGGTACAGCAGTTC
LOC_Os05g02170
OsAffx.26690.1.S1_at--939--7771Chr05:658082..658106 (25 bp)
GGTGCTGGTACAGCAGTTCGTCGCC
LOC_Os05g02170
OsAffx.26690.1.S1_at--772--5191Chr05:658018..658042 (25 bp)
GAATACGCCAATGTGAATCTAATCC
LOC_Os05g02170
OsAffx.26690.1.S1_at--903--751Chr05:658008..658032 (25 bp)
ATGTGAATCTAATCCTATTCCCCAC
LOC_Os05g02170
OsAffx.26690.1.S1_at--1063--8971Chr05:658005..658029 (25 bp)
TGAATCTAATCCTATTCCCCACGGG
LOC_Os05g02170
OsAffx.26690.1.S1_at--76--9531Chr05:658001..658025 (25 bp)
TCTAATCCTATTCCCCACGGGCTGT
LOC_Os05g02170
OsAffx.26690.1.S1_at--916--8331Chr05:657982..658006 (25 bp)
GGCTGTAACCCTAAAAATTGCGTGT
LOC_Os05g02170
Target Sequence 
GCTGAGCGCTACTCGATGGAGATTGGAGACTGCAGAACAGGAGAAGTGGAGATGGTGCCGCCGCTCGCCGGAGCTGGACT
GCCGTGCGCCCGTGCTGCGGTGCTGGTACAGCAGTTCGTCGCCGCCGCCGCCACCGAAGGTGAAGGGACGAGAAGTCGAG
AAGAATACGCCAATGTGAATCTAATCCTATTCCCCACGGGCTGTAACCCTAAAAATTGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis