Browse Element(s) Details


OsAffx.26706.1.S1_x_at

Description tigr:9633.m00227
TID=OsAffx.26706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0308011/11hypothetical protein
LOC_Os01g167309/11hypothetical protein
LOC_Os07g188506/11hypothetical protein
LOC_Os01g642201/11expressed protein
LOC_Os05g251941/11metal transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03050Os.54705.2.S1_x_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03050Os.54705.2.S1_at11/115+1164117..1168681DNA repair protein RAD51 homolog 2, putative, expressed
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26706.1.S1_x_at--1112--10233Chr05:1189848..1189872 (25 bp)
TTTGGTGATTCTTTCAAGCCTGGTG
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--314--3252Chr05:1189862..1189886 (25 bp)
CAAGCCTGGTGGTGAACTCTCAAAT
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--184--6433Chr05:1190119..1190143 (25 bp)
GATCTTCTTAAGGAACGCTCTGCAA
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--676--4813Chr05:1190135..1190159 (25 bp)
GCTCTGCAACTAACTTCTCTGTTGT
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--359--10773Chr05:1190171..1190195 (25 bp)
TTGATGGAGCATCCCTTGCAAGACC
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--286--1393Chr05:1190191..1190214 (24 bp)
AGACCTGTTCACAGCTGTGACTTGC
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--251--3053Chr05:1190306..1190330 (25 bp)
AATCGGCACTGGTTTGTGTTTGCAA
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--909--7134Chr05:1190557..1190581 (25 bp)
GTCTTGCCTGGAACCTTTATGTCAA
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--959--2532Chr05:1190604..1190628 (25 bp)
AACTACACAGTCATTTATCCTCCAG
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--640--3731Chr05:1191626..1191768 (25 bp)
CTCAAGTTCACGGAGACCTTTACAA
LOC_Os05g03080
OsAffx.26706.1.S1_x_at--846--7972Chr05:1191757..1191779 (23 bp)
GGAGACCTTTACAAACTACTGGATG
LOC_Os05g03080
Target Sequence 
TTTGGTGATTCTTTCAAGCCTGGTGGTGAACTCTCAAATTTTGATGATCTTCTTAAGGAACGCTCTGCAACTAACTTCTC
TGTTGTTAAAAAGTGTTTTGATGGAGCATCCCTTGCAAGACCTGTTCACAGCTGTGACTTGCTTTTTTTTCCAATTGTCA
AGAATCGGCACTGGTTTGTGTTTGCAATTGATCTGAAAGCTCAGAGGTTTGTTTTTTTGGATTCAATGTATGATGAGGAC
AGTATATATCATCAACAGATTAGGCCAAAACTGATATCAAACTTTAGTCTTGCCTGGAACCTTTATGTCAAAGATCATCC
AATAGATTTCAACAACTACACAGTCATTTATCCTCCAGTGCCCAAGCAAACAAACAGATTTGACTATGGTATTTTTACTC
TCAAGTTCACGGAGACCTTTACAAACTACTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26706.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis