Browse Element(s) Details


OsAffx.26738.1.S1_at

Description tigr:9633.m00435
TID=OsAffx.26738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0504011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05000NANA5+2401920..2408018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05010NANA5+2408335..2411273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05020Os.49479.1.S1_at11/115+2414955..2415600expressed protein
LOC_Os05g05030Os.7770.1.S1_at11/115+2427251..2428050expressed protein
LOC_Os05g05040OsAffx.26738.1.S1_at11/115+2430723..2431318expressed protein
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26738.1.S1_at--730--1411Chr05:2431235..2431259 (25 bp)
AGAAATTAGAAACGCCATGGCTCGT
LOC_Os05g05040
OsAffx.26738.1.S1_at--229--871Chr05:2431219..2431243 (25 bp)
ATGGCTCGTGCCAAGAACTCCTCTT
LOC_Os05g05040
OsAffx.26738.1.S1_at--663--5471Chr05:2431205..2431229 (25 bp)
GAACTCCTCTTCTGGCAATGGCGAG
LOC_Os05g05040
OsAffx.26738.1.S1_at--1067--8531Chr05:2431164..2431188 (25 bp)
TGGAGAAGATCGCCCCGGTCTACAA
LOC_Os05g05040
OsAffx.26738.1.S1_at--1120--1511Chr05:2431042..2431066 (25 bp)
AGCAGCAACAGTAGGCAGCCGGCGC
LOC_Os05g05040
OsAffx.26738.1.S1_at--67--4091Chr05:2431008..2431032 (25 bp)
CGAGCTGGCCGCATGGATCAGTGGT
LOC_Os05g05040
OsAffx.26738.1.S1_at--26--1111Chr05:2430989..2431013 (25 bp)
AGTGGTCACCAAGGAGTTCATCAGC
LOC_Os05g05040
OsAffx.26738.1.S1_at--237--7831Chr05:2430986..2431010 (25 bp)
GGTCACCAAGGAGTTCATCAGCAAG
LOC_Os05g05040
OsAffx.26738.1.S1_at--186--4071Chr05:2430956..2430980 (25 bp)
CGAGGACAAGAAGAGGCAGTTTAAT
LOC_Os05g05040
OsAffx.26738.1.S1_at--490--3211Chr05:2430931..2430955 (25 bp)
CAAGGAGACGAATGAGCAGTAAACT
LOC_Os05g05040
OsAffx.26738.1.S1_at--298--5931Chr05:2430918..2430942 (25 bp)
GAGCAGTAAACTCAGATTAATATTA
LOC_Os05g05040
Target Sequence 
AGAAATTAGAAACGCCATGGCTCGTGCCAAGAACTCCTCTTCTGGCAATGGCGAGGTGGATGTCCAGAAGGTGGAGAAGA
TCGCCCCGGTCTACAACCTCGTCACCAAGCCCTCCGTCTACGGCGCCAACCGGAGGGCGACGACGGTGAAGGCGAGGCCG
GCGACCACTGCCGTCGCCGCCGGCTTCGCCGGGAGCAGCAACAGTAGGCAGCCGGCGCCGGCGCCGGCGAGCTGGCCGCA
TGGATCAGTGGTCACCAAGGAGTTCATCAGCAAGTACATCGAGGACAAGAAGAGGCAGTTTAATCAAGGAGACGAATGAG
CAGTAAACTCAGATTAATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis