Browse Element(s) Details


OsAffx.26749.1.S1_x_at

Description tigr:9633.m00501
TID=OsAffx.26749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tetrahydrofolate dehydrogenasecyclohydrolase, catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0583011/11C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed
LOC_Os05g05830OsAffx.26749.1.S1_x_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830OsAffx.26749.1.S1_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.2919.1.S1_s_at11/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05830Os.32467.1.S1_at8/115+2903799..2906103C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os05g05840Os.3394.1.S1_at11/115+2906153..2909924Histidyl-tRNA synthetase, putative, expressed
LOC_Os05g05850OsAffx.14559.1.S1_at9/115+2910698..2911277hypothetical protein
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26749.1.S1_x_at--754--4131Chr05:2904257..2904535 (25 bp)
CCCAGCCGTCCATGGATTTAAGGTA
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--555--4491Chr05:2904261..2904539 (25 bp)
GCCGTCCATGGATTTAAGGTATGTG
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--565--7431Chr05:2904537..2904561 (25 bp)
GTGTTTATATTCACTATTTGGATCT
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--526--9671Chr05:2904547..2904571 (25 bp)
TCACTATTTGGATCTGAAACTGAAA
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--9--2311Chr05:2904570..2904594 (25 bp)
AAAGGCTATTTAAGGATATCTCCAA
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--234--7951Chr05:2904583..2904607 (25 bp)
GGATATCTCCAATCTCTACAATGTG
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--527--251Chr05:2904585..2904609 (25 bp)
ATATCTCCAATCTCTACAATGTGGG
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--246--7671Chr05:2904608..2904632 (25 bp)
GGGTTGGTACTTAATCGTGAGATTC
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--58--9431Chr05:2904622..2904646 (25 bp)
TCGTGAGATTCACACTGCAATTCCA
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--679--1971Chr05:2904635..2904659 (25 bp)
ACTGCAATTCCAGTCCTCTGTTGCT
LOC_Os05g05830
OsAffx.26749.1.S1_x_at--853--3771Chr05:2904650..2904674 (25 bp)
CTCTGTTGCTTGACATCTGGACTGA
LOC_Os05g05830
Target Sequence 
CCCAGCCGTCCATGGATTTAAGGTATGTGTTTATATTCACTATTTGGATCTGAAACTGAAAAGGCTATTTAAGGATATCT
CCAATCTCTACAATGTGGGGTTGGTACTTAATCGTGAGATTCACACTGCAATTCCAGTCCTCTGTTGCTTGACATCTGGA
CTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26749.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis