Browse Element(s) Details


OsAffx.26818.1.S1_x_at

Description tigr:9633.m00946
TID=OsAffx.26818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1083011/11Germin-like protein subfamily 1 member 11 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed
LOC_Os05g10850OsAffx.26819.1.S1_at11/115+5989032..5989543hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26818.1.S1_x_at--1095--5791Chr05:5965517..5965618 (25 bp)
GACCCGACGTCCAAAGTGCGGGTGA
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--437--4231Chr05:5965520..5965621 (25 bp)
CCGACGTCCAAAGTGCGGGTGAACG
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--307--2311Chr05:5965608..5965630 (23 bp)
AAAGTGCGGGTGAACGGGCTGCCGT
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--1057--2571Chr05:5965618..5965642 (25 bp)
AACGGGCTGCCGTGCAAGGACCCGG
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--803--4591Chr05:5965717..5965741 (25 bp)
GCGAGCCGGCGGTACGGGTTCACGG
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--865--10511Chr05:5965735..5965759 (25 bp)
TTCACGGCGCGGTCGGTGGACATCC
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--931--5091Chr05:5965827..5965851 (25 bp)
GCACTACCACCCGAGGGCGTCGGAG
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--193--4891Chr05:5965886..5965910 (25 bp)
GCTTCGTCACGTCGTACCCGGACAG
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--577--2151Chr05:5965907..5965931 (25 bp)
ACAGCCGCGTCGTGGCCAAGGTGCT
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--585--4571Chr05:5966005..5966029 (25 bp)
GCGCTGTACGCGTCGCTGAGCAGCC
LOC_Os05g10830
OsAffx.26818.1.S1_x_at--874--4391Chr05:5966095..5966119 (25 bp)
GCCAAGACGCTCCTCACCGACGAGG
LOC_Os05g10830
Target Sequence 
GACCCGACGTCCAAAGTGCGGGTGAACGGGCTGCCGTGCAAGGACCCGGCGGCGGTGACGGCGGACGACTTCTTCTTCTC
CGGCGTCGGCGAGCCGGCGGCCGGGGGAGGGCGCGGCGCCACGGCGAGCCGGCGGTACGGGTTCACGGCGCGGTCGGTGG
ACATCCCGGGGCTGAACACGCTGGGCGCGTCGGCCGCCCGCGTCGACGTGGCCCCCGGCGGCGTTTTCCCGCCGCACTAC
CACCCGAGGGCGTCGGAGACGGCGGTGGTGCTCGCCGGCGCCGTCTACTTCGGCTTCGTCACGTCGTACCCGGACAGCCG
CGTCGTGGCCAAGGTGCTCCGGCGAGGCGACGTGTTCGCCGTGCCGCAGGGCCTCGTCCACTTCCTCCACAACAACGGCA
GCGAGCCGGCGGCGCTGTACGCGTCGCTGAGCAGCCAGAACCCCGGCCTGGTGCTCGTCGCCGACGCCCTCCTCGCCGCG
CCGCTCCCCGTCGACCTCGTCGCCAAGACGCTCCTCACCGACGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26818.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis