Browse Element(s) Details


OsAffx.26825.1.S1_at

Description tigr:9633.m00980
TID=OsAffx.26825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1117011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11140Os.6310.1.S1_at11/115+6252623..6261853protein kinase family protein, putative, expressed
LOC_Os05g11150OsAffx.14632.1.S1_at11/115+6264236..6264772hypothetical protein
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein
LOC_Os05g11170OsAffx.26825.1.S1_at11/115+6284942..6286013hypothetical protein
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26825.1.S1_at--908--2311Chr05:6285667..6285691 (25 bp)
AAAGTTGAGCGGTGGCTTTCTTCTT
LOC_Os05g11170
OsAffx.26825.1.S1_at--779--831Chr05:6285706..6285727 (22 bp)
ATGGAGTCGCAGAAGCCGCTGGAAA
LOC_Os05g11170
OsAffx.26825.1.S1_at--802--5411Chr05:6285717..6285911 (25 bp)
GAAGCCGCTGGAAAACCACTTATGT
LOC_Os05g11170
OsAffx.26825.1.S1_at--699--4711Chr05:6285896..6285917 (22 bp)
GCTGGAAAACCACTTATGTCATCTG
LOC_Os05g11170
OsAffx.26825.1.S1_at--206--2651Chr05:6285900..6285924 (25 bp)
AACCACTTATGTCATCTGATGCCGG
LOC_Os05g11170
OsAffx.26825.1.S1_at--490--7651Chr05:6285924..6285948 (25 bp)
GGGAGGTCGAGTTCATATTATCGCA
LOC_Os05g11170
OsAffx.26825.1.S1_at--1144--6051Chr05:6285932..6285956 (25 bp)
GAGTTCATATTATCGCAGATCTGAG
LOC_Os05g11170
OsAffx.26825.1.S1_at--492--9352Chr06:14520729..14520750 (22 bp)
TCGCAGATCTGAGGCTGTGGCTATC
NONE
OsAffx.26825.1.S1_at--1096--471Chr05:6285950..6285974 (25 bp)
ATCTGAGGCTGTGGCTATCAATGCT
LOC_Os05g11170
OsAffx.26825.1.S1_at--611--6211Chr05:6285954..6285978 (25 bp)
GAGGCTGTGGCTATCAATGCTAGGA
LOC_Os05g11170
OsAffx.26825.1.S1_at--686--8651Chr05:6285959..6285983 (25 bp)
TGTGGCTATCAATGCTAGGATCACC
LOC_Os05g11170
Target Sequence 
AAAGTTGAGCGGTGGCTTTCTTCTTTGCATGGGGGTGAGATGGAGTCGCAGAAGCCGCTGGAAAACCACTTATGTCATCT
GATGCCGGGGAGGTCGAGTTCATATTATCGCAGATCTGAGGCTGTGGCTATCAATGCTAGGATCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis