Browse Element(s) Details


OsAffx.26826.1.S1_at

Description tigr:9633.m00984
TID=OsAffx.26826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1121011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11180OsAffx.14633.1.S1_at11/115+6292298..6293874hypothetical protein
LOC_Os05g11190OsAffx.14634.1.S1_x_at11/115+6296201..6298267RPT2, putative
LOC_Os05g11200OsAffx.4298.1.S1_at9/115+6309137..6310766hypothetical protein
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26826.1.S1_at--1154--2491Chr05:6312743..6312767 (25 bp)
AACATGGGCTTCGGCACGTTCTTCG
LOC_Os05g11210
OsAffx.26826.1.S1_at--136--4771Chr05:6312883..6312907 (25 bp)
GCTGCAGGACGGGATCGACGGCATG
LOC_Os05g11210
OsAffx.26826.1.S1_at--927--1931Chr05:6312900..6312924 (25 bp)
ACGGCATGGCGCGTAGGGTGCAGGA
LOC_Os05g11210
OsAffx.26826.1.S1_at--1136--2531Chr05:6312986..6313010 (25 bp)
AACTCCGGCGACGTGAACAAGCTTG
LOC_Os05g11210
OsAffx.26826.1.S1_at--307--5511Chr05:6313000..6313024 (25 bp)
GAACAAGCTTGGAACGTCCATTGCT
LOC_Os05g11210
OsAffx.26826.1.S1_at--320--3611Chr05:6313007..6313031 (25 bp)
CTTGGAACGTCCATTGCTGTTTGAG
LOC_Os05g11210
OsAffx.26826.1.S1_at--390--7271Chr05:6313015..6313039 (25 bp)
GTCCATTGCTGTTTGAGGATCAACC
LOC_Os05g11210
OsAffx.26826.1.S1_at--623--6131Chr05:6313029..6313053 (25 bp)
GAGGATCAACCAAGTTGGCGTTACT
LOC_Os05g11210
OsAffx.26826.1.S1_at--225--3231Chr05:6313039..6313063 (25 bp)
CAAGTTGGCGTTACTGTTTCGTGGG
LOC_Os05g11210
OsAffx.26826.1.S1_at--327--10231Chr05:6313068..6313092 (25 bp)
TATTGCACTGTTTTATATCGTATCA
LOC_Os05g11210
OsAffx.26826.1.S1_at--726--5291Chr05:6313135..6313159 (25 bp)
GAAGGAGCCCTATGTTTTTTTACTG
LOC_Os05g11210
Target Sequence 
AACATGGGCTTCGGCACGTTCTTCGCCACGCTCAGCGTCGCCGCCGCCGGCGCCGCCGCCGCCGCCGGCGGGTGCGAGCT
CCGGTGGGAGTTCGAGTGCGAGCCCGTGGCCGGCACGGCCAAGGAGGCGCTCGCCGCGCGGCTGCAGGACGGGATCGACG
GCATGGCGCGTAGGGTGCAGGAGGCGCTCGCCGGCCGCCGTGGCGACGCCGCCGCCGCCGCCGCGGTGGCGATGGAGGCC
GCCAACTCCGGCGACGTGAACAAGCTTGGAACGTCCATTGCTGTTTGAGGATCAACCAAGTTGGCGTTACTGTTTCGTGG
GGTTTTATTGCACTGTTTTATATCGTATCAAGTATTAATTGTTGTGTTGTTCATTTGGTTGTTTGTAGGGGGGAAGGAGC
CCTATGTTTTTTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis