Browse Element(s) Details


OsAffx.27050.1.S1_x_at

Description tigr:9633.m02553
TID=OsAffx.27050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2797011/11hypothetical protein
LOC_Os04g335404/11hypothetical protein
LOC_Os02g011902/11expressed protein
LOC_Os07g407801/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0031225cellular_componentanchored to membrane
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27050.1.S1_x_at--899--3311Chr05:16243401..16243425 (25 bp)
CACATGTTAGGATGGCACGTCAGCC
LOC_Os05g27970
OsAffx.27050.1.S1_x_at--303--2111Chr05:16243400..16243424 (25 bp)
ACATGTTAGGATGGCACGTCAGCCT
LOC_Os05g27970
OsAffx.27050.1.S1_x_at--1140--8771Chr05:16243397..16243421 (25 bp)
TGTTAGGATGGCACGTCAGCCTCTC
LOC_Os05g27970
OsAffx.27050.1.S1_x_at--497--6771Chr05:16243396..16243420 (25 bp)
GTTAGGATGGCACGTCAGCCTCTCC
LOC_Os05g27970
OsAffx.27050.1.S1_x_at--209--10292Chr04:20098774..20098797 (24 bp)
TTTCCTCCCCACGTGACTGTGATCG
LOC_Os04g33540
OsAffx.27050.1.S1_x_at--1145--9292Chr04:20098779..20098831 (25 bp)
TCCCCACGTGACTGTGATCGCGGCG
LOC_Os04g33540
OsAffx.27050.1.S1_x_at--436--1912Chr07:24437607..24437628 (22 bp)
ACGTGACTGTGATCGCGGCGCCGCT
LOC_Os07g40780
OsAffx.27050.1.S1_x_at--688--4493Chr04:20099192..20099211 (20 bp)
GCCGTGCAGAGGTACGGCCCCGACA
LOC_Os04g33540
OsAffx.27050.1.S1_x_at--241--1953Chr04:20099200..20099224 (25 bp)
ACGGCCCCGACATGACGCTGCGGGA
LOC_Os04g33540
OsAffx.27050.1.S1_x_at--1127--8471Chr05:16242858..16242882 (25 bp)
TGGCGGCTTATAGGGACATTGACGC
LOC_Os05g27970
OsAffx.27050.1.S1_x_at--710--4691Chr05:16242856..16242880 (25 bp)
GCGGCTTATAGGGACATTGACGCGG
LOC_Os05g27970
Target Sequence 
CACATGTTAGGATGGCACGTCAGCCTCTCCCTTCCTCTCCTTTCCTCCCCACGTGACTGTGATCGCGGCGCCGCTGAGGT
GAAGGCGGCGGTCGATGCGCGTGGCGGCGCCGACGCCCGCGCCACCGCGGCCAGTGCTGGGCGGGTTCGAAAAGGAGCAG
GAGGACGTCGCGCTCGCCCCCTCCTCCTCTCCGACTCCAATCATCGCGCCGCCCCCCTGTCCTCTCCAACTCCCCCTTTC
CCGCCCCTTTGGCGCCGCAGGCCTCGCCGCCTGCCGCCCATCTGGCGCCGCTCACCCTCGCCGCCTGTGGCCATGGTGTT
CGGCCCCGCCGCCGTGCAGAGGTACGGCCCCGACATGACGCTGCGGGAGGCACTGGATGGGAGGGGAGACATCTACCGGA
CGCTGCTGCGGGAGGCCACGGCGGTGCTCCTCAACGCCTACTACAACACTCCCGGCGTCGCAGCCGCCGCCGCCACCGCG
CTCGCCCGCCGACGCCGCCTTGCCCCGCCGCAACGCGGGAGCAGGAGGGCGTCAGCGGCAGGATGGCGGCTTATAGGGAC
ATTGACGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27050.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis