Browse Element(s) Details


OsAffx.2707.1.S1_at

Description tigr:9630.m02042
TID=OsAffx.2707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Alternative oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2130011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed
LOC_Os02g21310OsAffx.24365.1.S1_x_at9/112+12650102..12651466expressed protein
LOC_Os02g21320OsAffx.24453.1.S1_x_at8/112+12652063..12654527hypothetical protein
LOC_Os02g21320OsAffx.24453.3.S1_x_at6/112+12652063..12654527hypothetical protein
LOC_Os02g21330Os.52060.1.S1_at11/112+12656328..12657274expressed protein
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2707.1.S1_at--427--4411Chr02:12646148..12646172 (25 bp)
GCCAGGTGGACGGTCAAATCGTTGC
LOC_Os02g21300
OsAffx.2707.1.S1_at--477--8531Chr02:12646154..12646178 (25 bp)
TGGACGGTCAAATCGTTGCGCTGGC
LOC_Os02g21300
OsAffx.2707.1.S1_at--745--2271Chr02:12646163..12646187 (25 bp)
AAATCGTTGCGCTGGCCGGTTGACC
LOC_Os02g21300
OsAffx.2707.1.S1_at--1002--4231Chr02:12646178..12646198 (21 bp)
CCGGTTGACCTCTTCTTCCAGAGGA
LOC_Os02g21300
OsAffx.2707.1.S1_at--1051--4671Chr02:12647067..12647091 (25 bp)
GCGGTGCTGCATCTGCGTTCGCTGC
LOC_Os02g21300
OsAffx.2707.1.S1_at--228--8871Chr02:12647161..12647185 (25 bp)
TGATGACGTTCATGGAGGTGTCGCA
LOC_Os02g21300
OsAffx.2707.1.S1_at--253--1891Chr02:12647166..12647190 (25 bp)
ACGTTCATGGAGGTGTCGCAGCCGC
LOC_Os02g21300
OsAffx.2707.1.S1_at--756--1811Chr02:12647418..12647442 (25 bp)
ACCCTCAGGGACGTCGTCATGGTCG
LOC_Os02g21300
OsAffx.2707.1.S1_at--161--9951Chr02:12647481..12647633 (25 bp)
TACGCCTCCGACATACATTACCAGG
LOC_Os02g21300
OsAffx.2707.1.S1_at--434--5671Chr02:12647618..12647642 (25 bp)
GACATACATTACCAGGGTCACGCGC
LOC_Os02g21300
OsAffx.2707.1.S1_at--1147--2071Chr02:12647623..12647647 (25 bp)
ACATTACCAGGGTCACGCGCTGAGG
LOC_Os02g21300
Target Sequence 
GCCAGGTGGACGGTCAAATCGTTGCGCTGGCCGGTTGACCTCTTCTTCCAGAGGAGGTACGGGTGCCGGGCGATGATGCT
GGAGACGGTGGCGGCGGTGCCGGGGATGGTGGCCGGCGCGGTGCTGCATCTGCGTTCGCTGCGGCGGTTCGAGCACAGCG
GCGGGTGGATCCGGGCGCTGCTGGAGGAGGCCGAGAACGAGCGGATGCACCTGATGACGTTCATGGAGGTGTCGCAGCCG
CGGTGGTACGAGCGGGCGCTGGTGGTCGCCGTCCAGGGCGCCTTCTTCAACGCCTACCTCGCCTCCTACCTCCTCTCCCC
TCGCTTCGCCCACCGCATCGTCGGCTACCTCGAGGAGGAGGCCGTCCACTCCTACACCGAGTTCCTCCGCGACCTCGACG
CCGGCAAGATCGACGACGTCCCCGCCCCCGCCATCGCCATCGACTACTGGCGCCTCCCCGCCGACGCCACCCTCAGGGAC
GTCGTCATGGTCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCGACATACATTACCAGGGTCA
CGCGCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis