Browse Element(s) Details


OsAffx.27165.1.S1_at

Description tigr:9633.m03220
TID=OsAffx.27165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3473011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27165.1.S1_at--730--7631Chr05:20518526..20518550 (25 bp)
GGGAGCGCCTGTGGCTCGGCTCCTA
LOC_Os05g34730
OsAffx.27165.1.S1_at--856--5751Chr05:20518203..20518227 (25 bp)
GACGGTGCAAGAAAGCAAGGGACAC
LOC_Os05g34730
OsAffx.27165.1.S1_at--685--9011Chr05:20518198..20518222 (25 bp)
TGCAAGAAAGCAAGGGACACGTGGC
LOC_Os05g34730
OsAffx.27165.1.S1_at--668--2171Chr05:20518182..20518206 (25 bp)
ACACGTGGCGAGGTTAGCGACACGT
LOC_Os05g34730
OsAffx.27165.1.S1_at--223--3991Chr05:20518179..20518203 (25 bp)
CGTGGCGAGGTTAGCGACACGTATT
LOC_Os05g34730
OsAffx.27165.1.S1_at--259--6151Chr05:20518173..20518197 (25 bp)
GAGGTTAGCGACACGTATTGGTGTA
LOC_Os05g34730
OsAffx.27165.1.S1_at--516--9991Chr05:20518168..20518192 (25 bp)
TAGCGACACGTATTGGTGTAGGAAT
LOC_Os05g34730
OsAffx.27165.1.S1_at--129--9291Chr05:20518116..20518140 (25 bp)
TCCGGGAGTGAGGAGCTCATTGTTT
LOC_Os05g34730
OsAffx.27165.1.S1_at--1073--8011Chr05:20518112..20518136 (25 bp)
GGAGTGAGGAGCTCATTGTTTACGA
LOC_Os05g34730
OsAffx.27165.1.S1_at--86--6171Chr05:20518107..20518131 (25 bp)
GAGGAGCTCATTGTTTACGAGGGCT
LOC_Os05g34730
OsAffx.27165.1.S1_at--9--8091Chr05:20518105..20518129 (25 bp)
GGAGCTCATTGTTTACGAGGGCTTA
LOC_Os05g34730
Target Sequence 
GGGAGCGCCTGTGGCTCGGCTCCTACGCCACCGCCGAGGCCGCCGCCGTCGCGCACGACGCCGCCGTCTGCCTCCTCCGG
CTCGGCGGCGGCCGCCGCGCCGCCGCAGGCGGAGGCGGCGGGCTCAACTTCCCCGCCCGCGCGCTCGCCGCGGCGGCGGC
CGCCTCCTCCTACGGCGGCGCCGGCGGTCTCCTGTCCCCGCGCTCCGTGCAGCGCGTGGCGTCCGACGCCGGCATGGCCG
CCGACGCGCAGCTCGTGGACCTGCGCCGCGACCACCCGCCCGCCGCCGCCGCCGCCTCATCCTCCGGCAGCGGCGTGGCG
GGAGACGGTGCAAGAAAGCAAGGGACACGTGGCGAGGTTAGCGACACGTATTGGTGTAGGAATGGAGAGGATGGGAGCAG
AAGCCGGAGCTCCGGGAGTGAGGAGCTCATTGTTTACGAGGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis