Browse Element(s) Details


OsAffx.2719.1.S1_at

Description tigr:9630.m02215
TID=OsAffx.2719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2388011/11hypothetical protein
LOC_Os05g297005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g179704/11retrotransposon protein, putative, unclassified
LOC_Os04g176004/11retrotransposon protein, putative, unclassified
LOC_Os05g226902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g200602/11retrotransposon protein, putative, unclassified
LOC_Os12g183902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g319902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321802/11retrotransposon protein, putative, unclassified
LOC_Os06g321402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g319202/11retrotransposon protein, putative, unclassified
LOC_Os06g322202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g319502/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g23860NANA2+13809053..13810425hypothetical protein
LOC_Os02g23870Os.27140.1.S1_a_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S1_at11/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870Os.27140.2.S2_at8/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.30316.1.S1_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23870OsAffx.10048.1.S1_x_at1/112+13817762..13823594retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g23880OsAffx.2719.1.S1_at11/112+13827699..13828785hypothetical protein
LOC_Os02g23890Os.27496.1.S1_at11/112+13834539..13842236Translocation protein Sec62 containing protein, expressed
LOC_Os02g23900OsAffx.24395.1.S1_at10/112+13847497..13848194hypothetical protein
LOC_Os02g23910OsAffx.24396.1.S1_at11/112+13849071..13849337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2719.1.S1_at--149--7671Chr02:13828660..13828684 (25 bp)
GGGATTACTACTCTAGATGCGATGC
LOC_Os02g23880
OsAffx.2719.1.S1_at--335--10471Chr02:13828664..13828688 (25 bp)
TTACTACTCTAGATGCGATGCCACT
LOC_Os02g23880
OsAffx.2719.1.S1_at--182--2031Chr02:13828666..13828690 (25 bp)
ACTACTCTAGATGCGATGCCACTGA
LOC_Os02g23880
OsAffx.2719.1.S1_at--319--2015Chr04:9858975..9858994 (20 bp)
ACTCTAGATGCGATGCCACTGACAT
LOC_Os04g17970
OsAffx.2719.1.S1_at--1009--1296Chr04:9858975..9858999 (25 bp)
AGATGCGATGCCACTGACATACAAC
LOC_Os04g17970
OsAffx.2719.1.S1_at--234--9154Chr04:9858978..9859002 (25 bp)
TGCGATGCCACTGACATACAACCTT
LOC_Os04g17970
OsAffx.2719.1.S1_at--1041--576Chr09:6180435..6180459 (25 bp)
ATGCCACTGACATACAACCTTCAAG
NONE
OsAffx.2719.1.S1_at--433--5659Chr02:13828689..13828713 (25 bp)
GACATACAACCTTCAAGTCGAGTTA
LOC_Os02g23880
OsAffx.2719.1.S1_at--404--3258Chr02:13828695..13828719 (25 bp)
CAACCTTCAAGTCGAGTTATTTGAT
LOC_Os02g23880
OsAffx.2719.1.S1_at--964--7591Chr02:13828725..13828749 (25 bp)
GGGCATCGACCTCATGGAACCTTTC
LOC_Os02g23880
OsAffx.2719.1.S1_at--134--4071Chr02:13828731..13828755 (25 bp)
CGACCTCATGGAACCTTTCCCAAAG
LOC_Os02g23880
Target Sequence 
GGGATTACTACTCTAGATGCGATGCCACTGACATACAACCTTCAAGTCGAGTTATTTGATGTATGGGGCATCGACCTCAT
GGAACCTTTCCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis